From: cmzmasek@gmail.com Date: Tue, 2 Apr 2013 23:54:30 +0000 (+0000) Subject: inprogress X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=5dc987ad08c9bb0f4ef584dd415297c3599ea69d;p=jalview.git inprogress --- diff --git a/forester/ruby/evoruby/lib/evo/tool/phylogeny_factory.rb b/forester/ruby/evoruby/lib/evo/tool/phylogeny_factory.rb index c0770b3..7205451 100644 --- a/forester/ruby/evoruby/lib/evo/tool/phylogeny_factory.rb +++ b/forester/ruby/evoruby/lib/evo/tool/phylogeny_factory.rb @@ -169,7 +169,7 @@ module Evoruby if ( cmd =~ /%/ ) cmd =~ /(%.*?%)/ problem = $1 - puts( '[' + PRG_NAME + '] > WARNING : [' + id + '] command still contains placeholder: ' + problem ) + puts( '[' + PRG_NAME + '] > WARNING : [' + aln_name + '] command still contains placeholder: ' + problem ) log << "WARNING: command still contains placeholder: " + cmd + NL else tmp_cmd_file = file.to_str[ 0..4 ] + TMP_CMD_FILE_SUFFIX