From: amwaterhouse <Andrew Waterhouse>
Date: Fri, 21 Jan 2005 18:33:37 +0000 (+0000)
Subject: New colourScheme
X-Git-Tag: Release_2_0~735
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=5e021a615132ce9f8dd7e47558b7e2bf8b094082;p=jalview.git

New colourScheme
---

diff --git a/src/jalview/schemes/NucleotideColourScheme.java b/src/jalview/schemes/NucleotideColourScheme.java
new file mode 100755
index 0000000..caa6998
--- /dev/null
+++ b/src/jalview/schemes/NucleotideColourScheme.java
@@ -0,0 +1,37 @@
+package jalview.schemes;
+
+import java.awt.*;
+import java.util.*;
+
+
+public class NucleotideColourScheme extends ResidueColourScheme
+{
+  public NucleotideColourScheme() {
+  super(ResidueProperties.nucleotide,0);
+  }
+
+
+  public Color findColour(String n)
+  {
+    System.out.println("called");
+    return colors[((Integer)(ResidueProperties.nucleotideHash.get(n))).intValue()];
+  }
+
+
+  public Color findColour(String n, int j, Vector aa) {
+
+    if (threshold == 0 || aboveThreshold(aa, n, j))
+      try
+      {
+        return colors[ ( (Integer) (ResidueProperties.nucleotideHash.get(n))).intValue()];
+      }
+      catch (Exception ex)
+      {
+        return Color.white;
+      }
+    else
+      return Color.white;
+
+  }
+
+}