From: Jim Procter <jprocter@issues.jalview.org>
Date: Thu, 10 Sep 2015 01:39:15 +0000 (+0100)
Subject: JAL-1370 mark Jpred query sequence as reference sequence
X-Git-Tag: Release_2_10_0~446
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=5e419a000966d26e122d6a5ac0a29f93fa5e9600;p=jalview.git

JAL-1370 mark Jpred query sequence as reference sequence
---

diff --git a/src/jalview/ws/jws1/JPredThread.java b/src/jalview/ws/jws1/JPredThread.java
index 62566cf..a8a49d0 100644
--- a/src/jalview/ws/jws1/JPredThread.java
+++ b/src/jalview/ws/jws1/JPredThread.java
@@ -586,6 +586,8 @@ class JPredThread extends JWS1Thread implements WSClientI
         if (newWindow)
         {
           AlignFrame af;
+          ((AlignmentI) res[0]).setSeqrep(((AlignmentI) res[0])
+                  .getSequenceAt(0));
           if (input == null)
           {
             if (res[1] != null)