From: tcofoegbu <tcnofoegbu@dundee.ac.uk>
Date: Tue, 28 Apr 2015 10:45:42 +0000 (+0100)
Subject: JAL-1711 and JAL-1714 documentation updated
X-Git-Tag: Jalview_2_9~40^2~2^2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=5e4bcc12dadd2042f98db5d92d6069d732c2e5bb;p=jalview.git

JAL-1711 and JAL-1714 documentation updated
---

diff --git a/help/html/features/pdbsequencefetcher.html b/help/html/features/pdbsequencefetcher.html
index 98c0dd6..3d0eedb 100644
--- a/help/html/features/pdbsequencefetcher.html
+++ b/help/html/features/pdbsequencefetcher.html
@@ -50,24 +50,29 @@
 		query to the PDB database and display the results on-the-fly as seen
 		in the screen-shot above. Use the drop-down menu to select a specific
 		field to search by in the PDB database, the default option is <strong>'ALL'</strong>.
-	<br>
+		Furthermore, the PDB search interface also provides the following
+		functionalities:
 	
-	<br>Wild card searching: The PDB sequence fetcher also provides support for wild card querying of the PDB database.
-	<br>Single character (matches a single character) - ?
- The search string te?t would match both test and text.
-
-<br>Multiple characters (matches zero or more sequential characters) - *
-
-The wildcard search:
-tes*  - would match test, testing, and tester.
+	<ul>
+		<li>Retrieving a unique chain for a PDB entry: <br>To retrieve a
+			specific chain for a PDB entry, append the PDB ID with a colon
+			followed by the chain code in the search box. eg: 1xyz:A
+			 </li>
 
+		<li>Querying multiple PDB Id's in one operation:<br>The PDB search 
+		interface supports querying of multiple PDB Ids in one operation by
+		separating the list of PDB Ids with a semi-colon i.e: 1xyz;2xyz;3xyz </li>
 
-You can also use wildcard characters in the middle of a term. For
-example:
-te*t - would match test and text.
-*est  - would match pest and test.
- </p>
- 
+		<li>Wild card searching: <br>The PDB sequence fetcher also provides
+			support for wild card querying of the PDB database. <br>Single
+			character (matches a single character) - ? The search string te?t
+			would match both test and text. <br>Multiple characters (matches
+			zero or more sequential characters) - * The wildcard search: tes* -
+			would match test, testing, and tester. You can also use wildcard
+			characters in the middle of a term. For example: te*t - would match
+			test and text. *est - would match pest and test.
+		</li>
+	</ul>
 	<p>
 		<strong>Customising displayed meta-data</strong> <br>To change the
 		displayed meta-data in the search result, click the <strong>'Configure