From: amwaterhouse <Andrew Waterhouse>
Date: Thu, 10 Feb 2005 13:26:25 +0000 (+0000)
Subject: check that we're not off the end of a sequence
X-Git-Tag: Release_2_0~677
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=5f7d80cd8b01e051a6175b0ce8db0ad94d73df2f;p=jalview.git

check that we're not off the end of a sequence
---

diff --git a/src/jalview/schemes/ClustalxColourScheme.java b/src/jalview/schemes/ClustalxColourScheme.java
index b28ac76..d4789e6 100755
--- a/src/jalview/schemes/ClustalxColourScheme.java
+++ b/src/jalview/schemes/ClustalxColourScheme.java
@@ -63,7 +63,10 @@ public class ClustalxColourScheme implements ColourSchemeI
         seq = ( (SequenceI) seqs.get(j)).getSequence();
         for (i = start; i <= end; i++)
         {
-          res = ( (Integer) ResidueProperties.aaHash.get(seq.charAt(i) + "")).intValue();
+          if(seq.length()-1<i)
+            res = 23;
+          else
+            res = ( (Integer) ResidueProperties.aaHash.get(seq.charAt(i) + "")).intValue();
           cons2[i][res]++;
         }
         j++;