From: cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Date: Thu, 17 Jan 2013 00:14:48 +0000 (+0000)
Subject: inprogress
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=5ffe0c9e7660558cf3944593d7436bf908812b87;p=jalview.git

inprogress
---

diff --git a/forester/ruby/evoruby/exe/select_same_gn.rb b/forester/ruby/evoruby/exe/select_same_gn.rb
index a7f70c1..7e234cc 100755
--- a/forester/ruby/evoruby/exe/select_same_gn.rb
+++ b/forester/ruby/evoruby/exe/select_same_gn.rb
@@ -31,7 +31,7 @@ module Evoruby
   longest_non_unique_genes_msa = Msa.new
   gn_re = /GN=(\S+)/
   fragment_re = /fragment/i
-  species_re = /\[([A-Z]{3,5})\]$/
+  species_re = /\[([A-Z]{3,6})\]$/
 
   frag_counter = 0
   no_gn_counter = 0
@@ -107,7 +107,7 @@ module Evoruby
   if IGNORE_SEQS_LACKING_GN
     puts "Sequences ignored because no \"GN=\" in desc                  : " + no_gn_counter.to_s
   end
-  puts "Sequences ignored because dentical sequence in same species : " + same_seq_counter.to_s
+  puts "Sequences ignored because identical sequence in same species: " + same_seq_counter.to_s
   puts
   puts