From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Mon, 26 Sep 2011 12:43:25 +0000 (+0100)
Subject: tidying classpath and fixing InstallAnywhere build
X-Git-Tag: Release_2_7~17
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=61f107562c3acd1b88a4afa71fc4e883e9a4754b;p=jalview.git

tidying classpath and fixing InstallAnywhere build
---

diff --git a/.classpath b/.classpath
index fe89cba..1838768 100644
--- a/.classpath
+++ b/.classpath
@@ -14,16 +14,13 @@
 	<classpathentry kind="lib" path="lib/wsdl4j.jar"/>
 	<classpathentry kind="lib" path="lib/xercesImpl.jar"/>
 	<classpathentry kind="lib" path="lib/xml-apis.jar"/>
-
 	<classpathentry kind="lib" path="lib/castor-1.1-cycle-xml.jar" sourcepath="C:/Documents and Settings/JimP/workspace-3.3/castor/src/main/java"/>
 	<classpathentry kind="lib" path="lib/JGoogleAnalytics_0.3.jar" sourcepath="/JGoogleAnalytics/src/main/java"/>
 	<classpathentry kind="lib" path="lib/vamsas-client.jar"/>
-	<classpathentry kind="lib" path="lib/min-jaba-client.jar" sourcepath="/clustengine/datamodel"/>
 	<classpathentry kind="lib" path="lib/Jmol-12.1.13.jar" sourcepath="/Jmol"/>
 	<classpathentry kind="lib" path="appletlib/JmolApplet-12.1.13.jar"/>
 	<classpathentry kind="lib" path="lib/commons-logging-1.1.1.jar"/>
 	<classpathentry kind="lib" path="lib/apache-mime4j-0.6.jar" sourcepath="G:/InstallsDir/Sources for Development/apache-mime4j-0.6-src.zip"/>
-	<classpathentry kind="lib" path="lib/commons-codec-1.3.jar"/>
 	<classpathentry kind="lib" path="lib/httpclient-4.0.3.jar">
 		<attributes>
 			<attribute name="javadoc_location" value="file:/D:/InstallsDir/Sources for Development/httpconnect/httpcomponents-client-4.0.3/javadoc/"/>
@@ -40,7 +37,10 @@
 		</attributes>
 	</classpathentry>
 	<classpathentry kind="lib" path="lib/miglayout-4.0-swing.jar"/>
+	<classpathentry kind="lib" path="lib/jswingreader-0.3.jar" sourcepath="/jswingreader"/>
+	<classpathentry kind="lib" path="lib/min-jaba-client.jar"/>
+	<classpathentry kind="lib" path="lib/commons-codec-1.3.jar"/>
 	<classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/plugin.jar"/>
-	<classpathentry exported="true" kind="var" path="GROOVY_ECLIPSE_HOME/groovy-all-1.0.jar"/>
+<!--	<classpathentry exported="true" kind="var" path="GROOVY_ECLIPSE_HOME/groovy-all-1.0.jar"/> -->
 	<classpathentry kind="output" path="classes"/>
 </classpath>
diff --git a/lib/commons-logging.jar b/lib/commons-logging.jar
deleted file mode 100755
index b99c937..0000000
Binary files a/lib/commons-logging.jar and /dev/null differ
diff --git a/utils/InstallAnywhere/Jalview.iap_xml b/utils/InstallAnywhere/Jalview.iap_xml
index 301814c..b36ebf6 100755
--- a/utils/InstallAnywhere/Jalview.iap_xml
+++ b/utils/InstallAnywhere/Jalview.iap_xml
@@ -1410,6 +1410,52 @@ and any path to a file to save to the file]]></string>
 						</object>
 					</method>
 					<method name="addElement">
+						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="aa3a5220b6bc1">
+							<property name="belongsToUninstallPhase">
+								<boolean>false</boolean>
+							</property>
+							<property name="rollbackEnabledCancel">
+								<boolean>true</boolean>
+							</property>
+							<property name="rollbackEnabledError">
+								<boolean>true</boolean>
+							</property>
+							<property name="unixPermissions">
+								<string><![CDATA[664]]></string>
+							</property>
+							<property name="sourceName">
+								<string><![CDATA[commons-codec-1.3.jar]]></string>
+							</property>
+							<property name="overrideUnixPermissions">
+								<boolean>false</boolean>
+							</property>
+							<property name="sourcePath">
+								<string><![CDATA[/homes/ws-dev1/jalview/lib/]]></string>
+							</property>
+							<property name="shouldUninstall">
+								<boolean>true</boolean>
+							</property>
+							<property name="rollbackEnabledCancel">
+								<boolean>true</boolean>
+							</property>
+							<property name="rollbackEnabledError">
+								<boolean>true</boolean>
+							</property>
+							<property name="destinationName">
+								<string><![CDATA[commons-codec-1.3.jar]]></string>
+							</property>
+							<property name="fileSize">
+								<long>88615</long>
+							</property>
+							<property name="macBinary">
+								<boolean>false</boolean>
+							</property>
+							<property name="targetCheckKind">
+								<int>0</int>
+							</property>
+						</object>
+					</method>
+					<method name="addElement">
 						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="aa3a5220b6bc">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
@@ -4111,6 +4157,7 @@ and any path to a file to read from that file]]></string>
 										<object refID="8fbb17529b9d"/>
 										<object refID="aa3a521fb6bc"/>
 										<object refID="aa3a5220b6bc"/>
+										<object refID="aa3a5220b6bc1"/>
 										<object class="com.zerog.ia.installer.actions.InstallDirectory" objectID="24485f85a670">
 											<property name="belongsToUninstallPhase">
 												<boolean>false</boolean>
@@ -4171,6 +4218,9 @@ and any path to a file to read from that file]]></string>
 												<object refID="8fbb17529b9c"/>
 												<object refID="8fbb17539b9c"/>
 												<object refID="8fbb17529b9d"/>
+												<object refID="aa3a521fb6bc"/>
+												<object refID="aa3a5220b6bc"/>
+												<object refID="aa3a5220b6bc1"/>
 											</visualChildren>
 										</object>
 									</installChildren>