From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Fri, 1 Jun 2012 10:17:01 +0000 (+0100)
Subject: test demonstrating JWS-29 assertion failure
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=6256f785b5baf779b46ac1d9a5d3d9bec7a2b96c;p=jabaws.git

test demonstrating JWS-29 assertion failure
---

diff --git a/testsrc/compbio/data/sequence/FastaReaderTester.java b/testsrc/compbio/data/sequence/FastaReaderTester.java
index d57bbe5..3a3b747 100644
--- a/testsrc/compbio/data/sequence/FastaReaderTester.java
+++ b/testsrc/compbio/data/sequence/FastaReaderTester.java
@@ -34,6 +34,9 @@ public class FastaReaderTester {
 	static FastaSequence s3 = new FastaSequence(" 12 d t y wi 		k	jbke  	",
 			"  KLSHHDCD" + "   N" + "    H" + "    HSKCTEPHCGNSHQML\n\rHRDP"
 					+ "    CCDQCQSWEAENWCASMRKAILF");
+	static FastaSequence s4 = new FastaSequence(" 12 d t>y wi->foo 		k	jbke  	",
+			"  KLSHHDCD" + "   N" + "    H" + "    HSKCTEPHCGNSHQML\n\rHRDP"
+					+ "    CCDQCQSWEAENWCASMRKAILF");
 	@Test()
 	public void test() {
 
@@ -68,6 +71,7 @@ public class FastaReaderTester {
 		Assert.assertEquals(FastaReaderTester.s1, list.get(1));
 		Assert.assertEquals(FastaReaderTester.s2, list.get(2));
 		Assert.assertEquals(FastaReaderTester.s3, list.get(3));
+		Assert.assertEquals(FastaReaderTester.s4, list.get(4));
 
 	}
 }
diff --git a/testsrc/testdata/complicated.fasta b/testsrc/testdata/complicated.fasta
index 3c891d6..e0a71d5 100644
--- a/testsrc/testdata/complicated.fasta
+++ b/testsrc/testdata/complicated.fasta
@@ -20,4 +20,11 @@ EFITEA	WWGRWGAITFFHAH	ENKNEIQECSDQNLKE	SRTTCEIID   TCHLFTRHLDGW
    N
     H
     HSKCTEPHCGNSHQMLHRDP
-    CCDQCQSWEAENWCASMRKAILF
\ No newline at end of file
+    CCDQCQSWEAENWCASMRKAILF
+   > 12 d t>y wi->foo 		k	jbke  	
+  KLSHHDCD
+   N
+    H
+    HSKCTEPHCGNSHQMLHRDP
+    CCDQCQSWEAENWCASMRKAILF
+    
\ No newline at end of file