From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Fri, 20 Oct 2017 09:22:26 +0000 (+0100)
Subject: JAL-2755 update caller for method rename!
X-Git-Tag: Release_2_11_0~189
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=62d2ee96fc3876b3773e786596bc5bf3ed2388df;p=jalview.git

JAL-2755 update caller for method rename!
---

diff --git a/src/jalview/io/vcf/VCFLoader.java b/src/jalview/io/vcf/VCFLoader.java
index 6309fe7..e381b26 100644
--- a/src/jalview/io/vcf/VCFLoader.java
+++ b/src/jalview/io/vcf/VCFLoader.java
@@ -855,7 +855,8 @@ public class VCFLoader
      * call (e.g.) http://rest.ensembl.org/map/human/GRCh38/17:45051610..45109016:1/GRCh37
      */
     EnsemblMap mapper = new EnsemblMap();
-    int[] mapping = mapper.getMapping(species, chromosome, fromRef, toRef,
+    int[] mapping = mapper.getAssemblyMapping(species, chromosome, fromRef,
+            toRef,
             queryRange);
 
     if (mapping == null)