From: Jim Procter <j.procter@dundee.ac.uk>
Date: Wed, 30 Mar 2022 13:40:11 +0000 (+0100)
Subject: JAL-3982 todo notes
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=631b4913d708d2ccc3c1ad6b1650f507e7008601;p=jalview.git

JAL-3982 todo notes
---

diff --git a/src/jalview/rest/HighlightGenomicRangeEndpoint.java b/src/jalview/rest/HighlightGenomicRangeEndpoint.java
index b0aa435..26b9997 100644
--- a/src/jalview/rest/HighlightGenomicRangeEndpoint.java
+++ b/src/jalview/rest/HighlightGenomicRangeEndpoint.java
@@ -98,6 +98,12 @@ public class HighlightGenomicRangeEndpoint extends AbstractEndpoint
         }
       }
     }
+    // Currently:
+    // seq is an ENSG.. sequence - so 'mouseOverVamsasSequence' will highlight that position, but not the mapped position(s) in transcripts/products.
+    // a couple of options:
+    // 1. broaden search above to record mapped regions in transcripts and either highlight directly, or add a 'highlight all regions' call to structure selection manager
+    // 2. create a new structureselectionmanager call highlightLocusPosition(..)
+    
     // highlight
     for (SequenceI seq : ssmMap.keySet())
     {