From: cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Date: Fri, 18 May 2012 00:18:01 +0000 (+0000)
Subject: in progress
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=63b0bcd42a0f827776593c0f2cfa0605a611c500;p=jalview.git

in progress
---

diff --git a/forester/java/src/org/forester/application/msa_quality.java b/forester/java/src/org/forester/application/msa_quality.java
index 821cdbc..27e9a56 100644
--- a/forester/java/src/org/forester/application/msa_quality.java
+++ b/forester/java/src/org/forester/application/msa_quality.java
@@ -72,7 +72,7 @@ public class msa_quality {
             System.out.print( pos );
             System.out.print( ":\t" );
             System.out.print( mean );
-            if ( window > 2 ) {
+            if ( stats.getN() > 2 ) {
                 System.out.print( "\t" );
                 System.out.print( stats.median() );
                 System.out.print( "\t" );