From: Ben Soares <bsoares@dundee.ac.uk>
Date: Thu, 8 Aug 2019 15:17:55 +0000 (+0100)
Subject: JAL-3210 ben testing
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=64576dc751563c9cbe6139724f240701c37ffe5b;p=jalview.git

JAL-3210 ben testing
---

diff --git a/.classpath b/.classpath
index 038fd0d..ac52c77 100644
--- a/.classpath
+++ b/.classpath
@@ -1,6 +1,5 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <classpath>
-	<classpathentry kind="output" path="bin/default"/>
 	<classpathentry output="bin/main" kind="src" path="src">
 		<attributes>
 			<attribute name="gradle_scope" value="main"/>
@@ -14,63 +13,80 @@
 			<attribute name="test" value="true"/>
 		</attributes>
 	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8/"/>
 	<classpathentry kind="con" path="org.eclipse.buildship.core.gradleclasspathcontainer"/>
+	<classpathentry kind="output" path="bin/default"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-11/"/>
 	<classpathentry kind="output" path="bin/main"/>
 	<classpathentry kind="lib" path="help"/>
 	<classpathentry kind="lib" path="resources"/>
-	<classpathentry kind="lib" path="j8lib/jsoup-1.8.1.jar"/>
-	<classpathentry kind="lib" path="j8lib/jswingreader-0.3.jar"/>
-	<classpathentry kind="lib" path="j8lib/mail.jar"/>
-	<classpathentry kind="lib" path="j8lib/httpclient-4.0.3.jar"/>
-	<classpathentry kind="lib" path="j8lib/regex.jar"/>
-	<classpathentry kind="lib" path="j8lib/getdown-core.jar"/>
-	<classpathentry kind="lib" path="j8lib/JGoogleAnalytics_0.3.jar"/>
-	<classpathentry kind="lib" path="j8lib/jetty-http-9.2.10.v20150310.jar"/>
-	<classpathentry kind="lib" path="j8lib/commons-logging-1.1.1.jar"/>
-	<classpathentry kind="lib" path="j8lib/slf4j-log4j12-1.7.7.jar"/>
-	<classpathentry kind="lib" path="j8lib/servlet-api-3.1.jar"/>
-	<classpathentry kind="lib" path="j8lib/i4jruntime.jar"/>
-	<classpathentry kind="lib" path="j8lib/miglayout-4.0-swing.jar"/>
-	<classpathentry kind="lib" path="j8lib/activation.jar"/>
-	<classpathentry kind="lib" path="j8lib/quaqua-filechooser-only-8.0.jar"/>
-	<classpathentry kind="lib" path="j8lib/VARNAv3-93.jar"/>
-	<classpathentry kind="lib" path="j8lib/jersey-client-1.19.jar"/>
-	<classpathentry kind="lib" path="j8lib/wsdl4j.jar"/>
-	<classpathentry kind="lib" path="j8lib/commons-discovery.jar"/>
-	<classpathentry kind="lib" path="j8lib/slf4j-api-1.7.7.jar"/>
-	<classpathentry kind="lib" path="j8lib/VAqua5-patch.jar"/>
-	<classpathentry kind="lib" path="j8lib/jsr311-api-1.1.1.jar"/>
-	<classpathentry kind="lib" path="j8lib/libquaqua-8.0.jnilib.jar"/>
-	<classpathentry kind="lib" path="j8lib/Jmol-14.29.17.jar"/>
-	<classpathentry kind="lib" path="j8lib/jersey-json-1.19.jar"/>
-	<classpathentry kind="lib" path="j8lib/httpmime-4.0.3.jar"/>
-	<classpathentry kind="lib" path="j8lib/groovy-all-2.4.12-indy.jar"/>
-	<classpathentry kind="lib" path="j8lib/biojava-core-4.1.0.jar"/>
-	<classpathentry kind="lib" path="j8lib/libquaqua64-8.0.jnilib.jar"/>
-	<classpathentry kind="lib" path="j8lib/jabaws-min-client-2.2.0.jar"/>
-	<classpathentry kind="lib" path="j8lib/jetty-io-9.2.10.v20150310.jar"/>
-	<classpathentry kind="lib" path="j8lib/intervalstore-v1.0.jar"/>
-	<classpathentry kind="lib" path="j8lib/htsjdk-2.12.0.jar"/>
-	<classpathentry kind="lib" path="j8lib/commons-codec-1.3.jar"/>
-	<classpathentry kind="lib" path="j8lib/vamsas-client.jar"/>
-	<classpathentry kind="lib" path="j8lib/xml-apis.jar"/>
-	<classpathentry kind="lib" path="j8lib/jetty-server-9.2.10.v20150310.jar"/>
-	<classpathentry kind="lib" path="j8lib/jetty-util-9.2.10.v20150310.jar"/>
-	<classpathentry kind="lib" path="j8lib/xercesImpl.jar"/>
-	<classpathentry kind="lib" path="j8lib/commons-compress-1.18.jar"/>
-	<classpathentry kind="lib" path="j8lib/biojava-ontology-4.1.0.jar"/>
-	<classpathentry kind="lib" path="j8lib/log4j-to-slf4j-2.0-rc2.jar"/>
-	<classpathentry kind="lib" path="j8lib/jersey-core-1.19.jar"/>
-	<classpathentry kind="lib" path="j8lib/httpcore-4.0.1.jar"/>
-	<classpathentry kind="lib" path="j8lib/jhall.jar"/>
-	<classpathentry kind="lib" path="j8lib/axis.jar"/>
-	<classpathentry kind="lib" path="j8lib/jaxrpc.jar"/>
-	<classpathentry kind="lib" path="j8lib/java-json.jar"/>
-	<classpathentry kind="lib" path="j8lib/jfreesvg-2.1.jar"/>
-	<classpathentry kind="lib" path="j8lib/apache-mime4j-0.6.jar"/>
-	<classpathentry kind="lib" path="j8lib/saaj.jar"/>
-	<classpathentry kind="lib" path="j8lib/json_simple-1.1.jar"/>
+	<classpathentry kind="lib" path="j11lib/jsoup-1.8.1.jar"/>
+	<classpathentry kind="lib" path="j11lib/jswingreader-0.3.jar"/>
+	<classpathentry kind="lib" path="j11lib/mail-MODULE.jar"/>
+	<classpathentry kind="lib" path="j11lib/javax.servlet-api-MODULE.jar"/>
+	<classpathentry kind="lib" path="j11lib/httpclient-4.0.3.jar"/>
+	<classpathentry kind="lib" path="j11lib/regex.jar"/>
+	<classpathentry kind="lib" path="j11lib/getdown-core.jar"/>
+	<classpathentry kind="lib" path="j11lib/policy.jar"/>
+	<classpathentry kind="lib" path="j11lib/jaxb-api-java9.jar"/>
+	<classpathentry kind="lib" path="j11lib/JGoogleAnalytics_0.3.jar"/>
+	<classpathentry kind="lib" path="j11lib/jetty-http-9.2.10.v20150310.jar"/>
+	<classpathentry kind="lib" path="j11lib/javax.activation-MODULE.jar"/>
+	<classpathentry kind="lib" path="j11lib/commons-logging-1.1.1.jar"/>
+	<classpathentry kind="lib" path="j11lib/slf4j-log4j12-1.7.7.jar"/>
+	<classpathentry kind="lib" path="j11lib/i4jruntime.jar"/>
+	<classpathentry kind="lib" path="j11lib/miglayout-4.0-swing.jar"/>
+	<classpathentry kind="lib" path="j11lib/txw2.jar"/>
+	<classpathentry kind="lib" path="j11lib/jersey-json-1.19.1.jar"/>
+	<classpathentry kind="lib" path="j11lib/quaqua-filechooser-only-8.0.jar"/>
+	<classpathentry kind="lib" path="j11lib/VARNAv3-93.jar"/>
+	<classpathentry kind="lib" path="j11lib/groovy-2.5.6.jar"/>
+	<classpathentry kind="lib" path="j11lib/Jmol-14.29.17-no_netscape.jar"/>
+	<classpathentry kind="lib" path="j11lib/jaxb-runtime.jar"/>
+	<classpathentry kind="lib" path="j11lib/commons-discovery.jar"/>
+	<classpathentry kind="lib" path="j11lib/slf4j-api-1.7.7.jar"/>
+	<classpathentry kind="lib" path="j11lib/VAqua5-patch.jar"/>
+	<classpathentry kind="lib" path="j11lib/jaxws-api.jar"/>
+	<classpathentry kind="lib" path="j11lib/javax.xml.soap-api.jar"/>
+	<classpathentry kind="lib" path="j11lib/jsr311-api-1.1.1.jar"/>
+	<classpathentry kind="lib" path="j11lib/libquaqua-8.0.jnilib.jar"/>
+	<classpathentry kind="lib" path="j11lib/istack-commons-runtime.jar"/>
+	<classpathentry kind="lib" path="j11lib/stax-ex.jar"/>
+	<classpathentry kind="lib" path="j11lib/httpmime-4.0.3.jar"/>
+	<classpathentry kind="lib" path="j11lib/biojava-core-4.1.0.jar"/>
+	<classpathentry kind="lib" path="j11lib/libquaqua64-8.0.jnilib.jar"/>
+	<classpathentry kind="lib" path="j11lib/jabaws-min-client-2.2.0.jar"/>
+	<classpathentry kind="lib" path="j11lib/jersey-client-1.19.1.jar"/>
+	<classpathentry kind="lib" path="j11lib/jetty-io-9.2.10.v20150310.jar"/>
+	<classpathentry kind="lib" path="j11lib/intervalstore-v1.0.jar"/>
+	<classpathentry kind="lib" path="j11lib/htsjdk-2.12.0.jar"/>
+	<classpathentry kind="lib" path="j11lib/groovy-console-2.5.6.jar"/>
+	<classpathentry kind="lib" path="j11lib/commons-codec-1.3.jar"/>
+	<classpathentry kind="lib" path="j11lib/jaxws-rt-java9.jar"/>
+	<classpathentry kind="lib" path="j11lib/vamsas-client.jar"/>
+	<classpathentry kind="lib" path="j11lib/saaj-impl.jar"/>
+	<classpathentry kind="lib" path="j11lib/jersey-core-1.19.1.jar"/>
+	<classpathentry kind="lib" path="j11lib/jetty-server-9.2.10.v20150310.jar"/>
+	<classpathentry kind="lib" path="j11lib/jetty-util-9.2.10.v20150310.jar"/>
+	<classpathentry kind="lib" path="j11lib/xercesImpl.jar"/>
+	<classpathentry kind="lib" path="j11lib/FastInfoset.jar"/>
+	<classpathentry kind="lib" path="j11lib/commons-compress-1.18.jar"/>
+	<classpathentry kind="lib" path="j11lib/biojava-ontology-4.1.0.jar"/>
+	<classpathentry kind="lib" path="j11lib/log4j-to-slf4j-2.0-rc2.jar"/>
+	<classpathentry kind="lib" path="j11lib/wsdl4j-MODULE.jar"/>
+	<classpathentry kind="lib" path="j11lib/httpcore-4.0.1.jar"/>
+	<classpathentry kind="lib" path="j11lib/jhall.jar"/>
+	<classpathentry kind="lib" path="j11lib/stax2-api-MODULE.jar"/>
+	<classpathentry kind="lib" path="j11lib/gmbal-api-only-MODULE.jar"/>
+	<classpathentry kind="lib" path="j11lib/javax.jws-api-1.1.jar"/>
+	<classpathentry kind="lib" path="j11lib/axis.jar"/>
+	<classpathentry kind="lib" path="j11lib/javax.xml.rpc-api-1.1.2.jar"/>
+	<classpathentry kind="lib" path="j11lib/javax.annotation-api-MODULE.jar"/>
+	<classpathentry kind="lib" path="j11lib/java-json.jar"/>
+	<classpathentry kind="lib" path="j11lib/mimepull.jar"/>
+	<classpathentry kind="lib" path="j11lib/jfreesvg-2.1.jar"/>
+	<classpathentry kind="lib" path="j11lib/streambuffer.jar"/>
+	<classpathentry kind="lib" path="j11lib/apache-mime4j-0.6.jar"/>
+	<classpathentry kind="lib" path="j11lib/json_simple-1.1.jar"/>
 	<classpathentry kind="lib" path="utils/proguard_5.3.3.jar">
 		<attributes>
 			<attribute name="test" value="true"/>
diff --git a/.classpath.js b/.classpath.js
index 038fd0d..ac52c77 100644
--- a/.classpath.js
+++ b/.classpath.js
@@ -1,6 +1,5 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <classpath>
-	<classpathentry kind="output" path="bin/default"/>
 	<classpathentry output="bin/main" kind="src" path="src">
 		<attributes>
 			<attribute name="gradle_scope" value="main"/>
@@ -14,63 +13,80 @@
 			<attribute name="test" value="true"/>
 		</attributes>
 	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8/"/>
 	<classpathentry kind="con" path="org.eclipse.buildship.core.gradleclasspathcontainer"/>
+	<classpathentry kind="output" path="bin/default"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-11/"/>
 	<classpathentry kind="output" path="bin/main"/>
 	<classpathentry kind="lib" path="help"/>
 	<classpathentry kind="lib" path="resources"/>
-	<classpathentry kind="lib" path="j8lib/jsoup-1.8.1.jar"/>
-	<classpathentry kind="lib" path="j8lib/jswingreader-0.3.jar"/>
-	<classpathentry kind="lib" path="j8lib/mail.jar"/>
-	<classpathentry kind="lib" path="j8lib/httpclient-4.0.3.jar"/>
-	<classpathentry kind="lib" path="j8lib/regex.jar"/>
-	<classpathentry kind="lib" path="j8lib/getdown-core.jar"/>
-	<classpathentry kind="lib" path="j8lib/JGoogleAnalytics_0.3.jar"/>
-	<classpathentry kind="lib" path="j8lib/jetty-http-9.2.10.v20150310.jar"/>
-	<classpathentry kind="lib" path="j8lib/commons-logging-1.1.1.jar"/>
-	<classpathentry kind="lib" path="j8lib/slf4j-log4j12-1.7.7.jar"/>
-	<classpathentry kind="lib" path="j8lib/servlet-api-3.1.jar"/>
-	<classpathentry kind="lib" path="j8lib/i4jruntime.jar"/>
-	<classpathentry kind="lib" path="j8lib/miglayout-4.0-swing.jar"/>
-	<classpathentry kind="lib" path="j8lib/activation.jar"/>
-	<classpathentry kind="lib" path="j8lib/quaqua-filechooser-only-8.0.jar"/>
-	<classpathentry kind="lib" path="j8lib/VARNAv3-93.jar"/>
-	<classpathentry kind="lib" path="j8lib/jersey-client-1.19.jar"/>
-	<classpathentry kind="lib" path="j8lib/wsdl4j.jar"/>
-	<classpathentry kind="lib" path="j8lib/commons-discovery.jar"/>
-	<classpathentry kind="lib" path="j8lib/slf4j-api-1.7.7.jar"/>
-	<classpathentry kind="lib" path="j8lib/VAqua5-patch.jar"/>
-	<classpathentry kind="lib" path="j8lib/jsr311-api-1.1.1.jar"/>
-	<classpathentry kind="lib" path="j8lib/libquaqua-8.0.jnilib.jar"/>
-	<classpathentry kind="lib" path="j8lib/Jmol-14.29.17.jar"/>
-	<classpathentry kind="lib" path="j8lib/jersey-json-1.19.jar"/>
-	<classpathentry kind="lib" path="j8lib/httpmime-4.0.3.jar"/>
-	<classpathentry kind="lib" path="j8lib/groovy-all-2.4.12-indy.jar"/>
-	<classpathentry kind="lib" path="j8lib/biojava-core-4.1.0.jar"/>
-	<classpathentry kind="lib" path="j8lib/libquaqua64-8.0.jnilib.jar"/>
-	<classpathentry kind="lib" path="j8lib/jabaws-min-client-2.2.0.jar"/>
-	<classpathentry kind="lib" path="j8lib/jetty-io-9.2.10.v20150310.jar"/>
-	<classpathentry kind="lib" path="j8lib/intervalstore-v1.0.jar"/>
-	<classpathentry kind="lib" path="j8lib/htsjdk-2.12.0.jar"/>
-	<classpathentry kind="lib" path="j8lib/commons-codec-1.3.jar"/>
-	<classpathentry kind="lib" path="j8lib/vamsas-client.jar"/>
-	<classpathentry kind="lib" path="j8lib/xml-apis.jar"/>
-	<classpathentry kind="lib" path="j8lib/jetty-server-9.2.10.v20150310.jar"/>
-	<classpathentry kind="lib" path="j8lib/jetty-util-9.2.10.v20150310.jar"/>
-	<classpathentry kind="lib" path="j8lib/xercesImpl.jar"/>
-	<classpathentry kind="lib" path="j8lib/commons-compress-1.18.jar"/>
-	<classpathentry kind="lib" path="j8lib/biojava-ontology-4.1.0.jar"/>
-	<classpathentry kind="lib" path="j8lib/log4j-to-slf4j-2.0-rc2.jar"/>
-	<classpathentry kind="lib" path="j8lib/jersey-core-1.19.jar"/>
-	<classpathentry kind="lib" path="j8lib/httpcore-4.0.1.jar"/>
-	<classpathentry kind="lib" path="j8lib/jhall.jar"/>
-	<classpathentry kind="lib" path="j8lib/axis.jar"/>
-	<classpathentry kind="lib" path="j8lib/jaxrpc.jar"/>
-	<classpathentry kind="lib" path="j8lib/java-json.jar"/>
-	<classpathentry kind="lib" path="j8lib/jfreesvg-2.1.jar"/>
-	<classpathentry kind="lib" path="j8lib/apache-mime4j-0.6.jar"/>
-	<classpathentry kind="lib" path="j8lib/saaj.jar"/>
-	<classpathentry kind="lib" path="j8lib/json_simple-1.1.jar"/>
+	<classpathentry kind="lib" path="j11lib/jsoup-1.8.1.jar"/>
+	<classpathentry kind="lib" path="j11lib/jswingreader-0.3.jar"/>
+	<classpathentry kind="lib" path="j11lib/mail-MODULE.jar"/>
+	<classpathentry kind="lib" path="j11lib/javax.servlet-api-MODULE.jar"/>
+	<classpathentry kind="lib" path="j11lib/httpclient-4.0.3.jar"/>
+	<classpathentry kind="lib" path="j11lib/regex.jar"/>
+	<classpathentry kind="lib" path="j11lib/getdown-core.jar"/>
+	<classpathentry kind="lib" path="j11lib/policy.jar"/>
+	<classpathentry kind="lib" path="j11lib/jaxb-api-java9.jar"/>
+	<classpathentry kind="lib" path="j11lib/JGoogleAnalytics_0.3.jar"/>
+	<classpathentry kind="lib" path="j11lib/jetty-http-9.2.10.v20150310.jar"/>
+	<classpathentry kind="lib" path="j11lib/javax.activation-MODULE.jar"/>
+	<classpathentry kind="lib" path="j11lib/commons-logging-1.1.1.jar"/>
+	<classpathentry kind="lib" path="j11lib/slf4j-log4j12-1.7.7.jar"/>
+	<classpathentry kind="lib" path="j11lib/i4jruntime.jar"/>
+	<classpathentry kind="lib" path="j11lib/miglayout-4.0-swing.jar"/>
+	<classpathentry kind="lib" path="j11lib/txw2.jar"/>
+	<classpathentry kind="lib" path="j11lib/jersey-json-1.19.1.jar"/>
+	<classpathentry kind="lib" path="j11lib/quaqua-filechooser-only-8.0.jar"/>
+	<classpathentry kind="lib" path="j11lib/VARNAv3-93.jar"/>
+	<classpathentry kind="lib" path="j11lib/groovy-2.5.6.jar"/>
+	<classpathentry kind="lib" path="j11lib/Jmol-14.29.17-no_netscape.jar"/>
+	<classpathentry kind="lib" path="j11lib/jaxb-runtime.jar"/>
+	<classpathentry kind="lib" path="j11lib/commons-discovery.jar"/>
+	<classpathentry kind="lib" path="j11lib/slf4j-api-1.7.7.jar"/>
+	<classpathentry kind="lib" path="j11lib/VAqua5-patch.jar"/>
+	<classpathentry kind="lib" path="j11lib/jaxws-api.jar"/>
+	<classpathentry kind="lib" path="j11lib/javax.xml.soap-api.jar"/>
+	<classpathentry kind="lib" path="j11lib/jsr311-api-1.1.1.jar"/>
+	<classpathentry kind="lib" path="j11lib/libquaqua-8.0.jnilib.jar"/>
+	<classpathentry kind="lib" path="j11lib/istack-commons-runtime.jar"/>
+	<classpathentry kind="lib" path="j11lib/stax-ex.jar"/>
+	<classpathentry kind="lib" path="j11lib/httpmime-4.0.3.jar"/>
+	<classpathentry kind="lib" path="j11lib/biojava-core-4.1.0.jar"/>
+	<classpathentry kind="lib" path="j11lib/libquaqua64-8.0.jnilib.jar"/>
+	<classpathentry kind="lib" path="j11lib/jabaws-min-client-2.2.0.jar"/>
+	<classpathentry kind="lib" path="j11lib/jersey-client-1.19.1.jar"/>
+	<classpathentry kind="lib" path="j11lib/jetty-io-9.2.10.v20150310.jar"/>
+	<classpathentry kind="lib" path="j11lib/intervalstore-v1.0.jar"/>
+	<classpathentry kind="lib" path="j11lib/htsjdk-2.12.0.jar"/>
+	<classpathentry kind="lib" path="j11lib/groovy-console-2.5.6.jar"/>
+	<classpathentry kind="lib" path="j11lib/commons-codec-1.3.jar"/>
+	<classpathentry kind="lib" path="j11lib/jaxws-rt-java9.jar"/>
+	<classpathentry kind="lib" path="j11lib/vamsas-client.jar"/>
+	<classpathentry kind="lib" path="j11lib/saaj-impl.jar"/>
+	<classpathentry kind="lib" path="j11lib/jersey-core-1.19.1.jar"/>
+	<classpathentry kind="lib" path="j11lib/jetty-server-9.2.10.v20150310.jar"/>
+	<classpathentry kind="lib" path="j11lib/jetty-util-9.2.10.v20150310.jar"/>
+	<classpathentry kind="lib" path="j11lib/xercesImpl.jar"/>
+	<classpathentry kind="lib" path="j11lib/FastInfoset.jar"/>
+	<classpathentry kind="lib" path="j11lib/commons-compress-1.18.jar"/>
+	<classpathentry kind="lib" path="j11lib/biojava-ontology-4.1.0.jar"/>
+	<classpathentry kind="lib" path="j11lib/log4j-to-slf4j-2.0-rc2.jar"/>
+	<classpathentry kind="lib" path="j11lib/wsdl4j-MODULE.jar"/>
+	<classpathentry kind="lib" path="j11lib/httpcore-4.0.1.jar"/>
+	<classpathentry kind="lib" path="j11lib/jhall.jar"/>
+	<classpathentry kind="lib" path="j11lib/stax2-api-MODULE.jar"/>
+	<classpathentry kind="lib" path="j11lib/gmbal-api-only-MODULE.jar"/>
+	<classpathentry kind="lib" path="j11lib/javax.jws-api-1.1.jar"/>
+	<classpathentry kind="lib" path="j11lib/axis.jar"/>
+	<classpathentry kind="lib" path="j11lib/javax.xml.rpc-api-1.1.2.jar"/>
+	<classpathentry kind="lib" path="j11lib/javax.annotation-api-MODULE.jar"/>
+	<classpathentry kind="lib" path="j11lib/java-json.jar"/>
+	<classpathentry kind="lib" path="j11lib/mimepull.jar"/>
+	<classpathentry kind="lib" path="j11lib/jfreesvg-2.1.jar"/>
+	<classpathentry kind="lib" path="j11lib/streambuffer.jar"/>
+	<classpathentry kind="lib" path="j11lib/apache-mime4j-0.6.jar"/>
+	<classpathentry kind="lib" path="j11lib/json_simple-1.1.jar"/>
 	<classpathentry kind="lib" path="utils/proguard_5.3.3.jar">
 		<attributes>
 			<attribute name="test" value="true"/>
diff --git a/.settings/org.eclipse.jdt.core.prefs b/.settings/org.eclipse.jdt.core.prefs
index 55c7b93..78e44f4 100644
--- a/.settings/org.eclipse.jdt.core.prefs
+++ b/.settings/org.eclipse.jdt.core.prefs
@@ -1,5 +1,5 @@
 #
-#Thu Aug 08 15:01:53 BST 2019
+#Thu Aug 08 16:17:25 BST 2019
 org.eclipse.jdt.core.formatter.insert_space_before_comma_in_for_inits=do not insert
 org.eclipse.jdt.core.formatter.brace_position_for_block=next_line
 org.eclipse.jdt.core.formatter.insert_space_after_at_in_annotation_type_declaration=do not insert
@@ -12,7 +12,7 @@ org.eclipse.jdt.core.formatter.insert_space_before_comma_in_allocation_expressio
 org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_if=do not insert
 org.eclipse.jdt.core.formatter.insert_space_before_opening_brace_in_block=insert
 org.eclipse.jdt.core.formatter.insert_space_after_semicolon_in_try_resources=insert
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
+org.eclipse.jdt.core.compiler.codegen.targetPlatform=11
 org.eclipse.jdt.core.formatter.insert_space_before_closing_angle_bracket_in_type_parameters=do not insert
 org.eclipse.jdt.core.formatter.comment.clear_blank_lines_in_javadoc_comment=false
 org.eclipse.jdt.core.formatter.never_indent_line_comments_on_first_column=false
@@ -267,7 +267,7 @@ org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_constructor_
 org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_try=do not insert
 org.eclipse.jdt.core.formatter.continuation_indentation_for_array_initializer=2
 org.eclipse.jdt.core.formatter.lineSplit=76
-org.eclipse.jdt.core.compiler.source=1.8
+org.eclipse.jdt.core.compiler.source=11
 org.eclipse.jdt.core.formatter.insert_new_line_in_empty_anonymous_type_declaration=insert
 org.eclipse.jdt.core.formatter.insert_new_line_in_empty_method_body=insert
 org.eclipse.jdt.core.formatter.tabulation.size=2
@@ -288,11 +288,11 @@ org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_catch=do not
 org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_cast=do not insert
 org.eclipse.jdt.core.formatter.insert_space_before_comma_in_type_arguments=do not insert
 org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_annotation=do not insert
-eclipse.preferences.version=1
 org.eclipse.jdt.core.formatter.brace_position_for_lambda_body=end_of_line
-org.eclipse.jdt.core.formatter.insert_space_before_closing_bracket_in_array_reference=do not insert
+eclipse.preferences.version=1
 org.eclipse.jdt.core.formatter.enabling_tag=@formatter\:on
-org.eclipse.jdt.core.compiler.compliance=1.8
+org.eclipse.jdt.core.formatter.insert_space_before_closing_bracket_in_array_reference=do not insert
+org.eclipse.jdt.core.compiler.compliance=11
 org.eclipse.jdt.core.formatter.blank_lines_after_package=1
 org.eclipse.jdt.core.formatter.alignment_for_superinterfaces_in_type_declaration=16
 org.eclipse.jdt.core.formatter.insert_new_line_at_end_of_file_if_missing=do not insert
diff --git a/gradle.properties b/gradle.properties
index eec61da..16ff61d 100644
--- a/gradle.properties
+++ b/gradle.properties
@@ -1,7 +1,7 @@
 jalviewDir = .
 
-JAVA_VERSION = 1.8
-#JAVA_VERSION = 11
+#JAVA_VERSION = 1.8
+JAVA_VERSION = 11
 JALVIEW_VERSION = DEVELOPMENT
 INSTALLATION = Source
 jalview_keystore = keys/.keystore