From: Jim Procter <jprocter@dundee.ac.uk>
Date: Thu, 1 May 2014 13:24:07 +0000 (+0100)
Subject: make sure valid value for non-gapped calculation with zero symbol data
X-Git-Tag: Jalview_2_9~190^2~20
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=64e9fe452576749d247b6dca0fc231237c40f743;p=jalview.git

make sure valid value for non-gapped calculation with zero symbol data
---

diff --git a/src/jalview/analysis/AAFrequency.java b/src/jalview/analysis/AAFrequency.java
index ca4e71c..75a777f 100755
--- a/src/jalview/analysis/AAFrequency.java
+++ b/src/jalview/analysis/AAFrequency.java
@@ -183,9 +183,11 @@ public class AAFrequency
       residueHash.put(PID_GAPS, new Float(percentage));
 
       if (nongap>0) {
+        // calculate for non-gapped too
         percentage = ((float) maxCount * 100) / nongap;
-        residueHash.put(PID_NOGAPS, new Float(percentage));
       }
+      residueHash.put(PID_NOGAPS, new Float(percentage));
+      
       result[i] = residueHash;
     }
   }