From: cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Date: Fri, 7 Sep 2012 17:30:52 +0000 (+0000)
Subject: in progress
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=651b2daf16f2136f63479c76b1e0d5a92b74c708;p=jalview.git

in progress
---

diff --git a/forester/ruby/evoruby/lib/evo/apps/domains_to_forester.rb b/forester/ruby/evoruby/lib/evo/apps/domains_to_forester.rb
index a031150..753f3e4 100644
--- a/forester/ruby/evoruby/lib/evo/apps/domains_to_forester.rb
+++ b/forester/ruby/evoruby/lib/evo/apps/domains_to_forester.rb
@@ -56,6 +56,7 @@ module Evoruby
       File.open( domains_list_file ) do | file |
         while line = file.gets
           if !is_ignorable?( line )
+            
             a = line.split( column_delimiter )
             l = a.length
             if ( ( l < 4 ) || ( e_value_threshold >= 0.0 && l < 5 ) )
@@ -66,6 +67,14 @@ module Evoruby
             domain_name  = a[ 1 ]
             seq_from     = -1
             seq_to       = -1
+            ##########################################
+            if domain_name =~ /RRM_\d/
+              puts "ignoring " + line 
+              next
+            end
+            ##########################################
+            
+            
             begin
               seq_from = a[ 2 ].to_i
             rescue Exception