Comparing to previous version of JABAWS 2.0.1 offers a greater number of diverse web services, Amazon EC 2 integration and improved easy of use. It contains
-- updates for all multiple sequence alignment services
- - four new protein disorder prediction services
- - Clustal Omega multiple sequence alignment web service
- - amino acid conservation service
- - web services execution statistics visialization
- - web services status check from a web page
- - VirtualBox support was dropped in favour of VMware
- - new WAR package for Mac users
- - Amazon Machine Image (AMI) distributive to enable users to use JABAWS on the EC2 cloud
- - Improved web services client API
- - Simplified WAR package installation
+This release of JABAWS 2.0.1 is mostly bug fixing release. This is a list of bugs which have been fixed in JABAWS 2.0.1:
+
+ - Disembl returned swapped strings for HOTLOOPS and REM465
+ - Jronn failed to process jobs with more than 3 sequences
+ - JABAWS could not deal with FASTA records with the '>' symbols in the record identificator
+ - Change of parameter description for AAcon: parameters have been replaced with options for calculation methods. This allows a user to get several AAcon's conservation scores
+ in one call
+ - JABAW never cleaned up job directories. Now JABAWS deletes the job directory if it exist longer then a period defined in Engine.properties
+ - Default web security has been incompatible with Tomcat 7.0.31 and newer
What is JABAWS client?
-
A JABAWS client is a program that lets you run the bioinformatics methods for which a JABAWS server provides web
services. The most basic JABAWS client is a command line Java application which can call any of the JABAWS web
@@ -142,12 +143,14 @@
provides a graphical JABAWS client. This client has the same functionality as the command line client, but
instead allows JABAWS services to be accessed in a more user-friendly manner, through a graphical user interface.
+
JABAWS versions compatibility and Jalview support
JABAWS version 2.0.1 is fully backward compatible with JABAWS v1.0 and v2.0. That means that all JABAWS v1.0 and
v2.0 clients should be able to use JABAWS 2.0.1 instead. To benefit of new web services introduced in JABAWS 2.0
the clients compitible with JABAWS v1.0 have to be updated.
+
Programmatic access to JABAWS
JABA Web Services are WS-I basic profile compliant, which means they can be accessed using any programming language
@@ -158,6 +161,7 @@ This package is based on the autogenerated source code produced by data model javadoc.
+
Last update: 28 June 2013
Peter Troshin, Jim Procter and Geoff Barton, The Barton Group, University of Dundee, UK
diff --git a/website/manual_qs_amazon.html b/website/manual_qs_amazon.html
index 04d7fb5..780814b 100644
--- a/website/manual_qs_amazon.html
+++ b/website/manual_qs_amazon.html
@@ -50,7 +50,7 @@
Running JABAWS on the cloud, for one or many users |
- JABAWS on the Amazon cloud |
+ JABAWS on the Amazon cloud |
Running JABAWS for my group, lab, or organization on the local infrastructure |
diff --git a/website/manual_qs_client.html b/website/manual_qs_client.html
index 67ff7e5..f8396ea 100644
--- a/website/manual_qs_client.html
+++ b/website/manual_qs_client.html
@@ -48,7 +48,7 @@
Running JABAWS on the cloud, for one or many users |
- JABAWS on the Amazon cloud |
+ JABAWS on the Amazon cloud |
Running JABAWS for my group, lab, or organization on the local infrastructure |
diff --git a/website/manual_qs_va.html b/website/manual_qs_va.html
index 33a892f..7db41ee 100644
--- a/website/manual_qs_va.html
+++ b/website/manual_qs_va.html
@@ -49,7 +49,7 @@
Running JABAWS on the cloud, for one or many users |
- JABAWS on the Amazon cloud |
+ JABAWS on the Amazon cloud |
Running JABAWS for my group, lab, or organization on the local infrastructure |
diff --git a/website/manual_qs_war.html b/website/manual_qs_war.html
index d836ce0..470122f 100644
--- a/website/manual_qs_war.html
+++ b/website/manual_qs_war.html
@@ -48,7 +48,7 @@
Running JABAWS on the cloud, for one or many users |
- JABAWS on the Amazon cloud |
+ JABAWS on the Amazon cloud |
Running JABAWS for my group, lab, or organization on the local infrastructure |
diff --git a/website/quick_start.html b/website/quick_start.html
index 2dc5cf2..bb866a6 100644
--- a/website/quick_start.html
+++ b/website/quick_start.html
@@ -47,7 +47,7 @@
Running JABAWS on the cloud, for one or many users |
- JABAWS on the Amazon cloud |
+ JABAWS on the Amazon cloud |
Running JABAWS for my group, lab, or organization on the local infrastructure |