From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Thu, 25 Jun 2020 12:53:44 +0000 (+0100)
Subject: JAL-2010 unused prototype method removed
X-Git-Tag: Develop-2_11_2_0-d20201215~24^2~42
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=663e58dcf0754621ce271a657da649fae653ba35;p=jalview.git

JAL-2010 unused prototype method removed
---

diff --git a/src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java b/src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java
index c8875b4..487e93b 100644
--- a/src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java
+++ b/src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java
@@ -535,34 +535,6 @@ public abstract class JalviewChimeraBinding extends AAStructureBindingModel
   }
 
   /**
-   * Send a 'show' command for all atoms in the currently selected columns
-   * 
-   * TODO: pull up to abstract structure viewer interface
-   * 
-   * @param vp
-   */
-  public void highlightSelection(AlignmentViewPanel vp)
-  {
-    List<Integer> cols = vp.getAlignViewport().getColumnSelection()
-            .getSelected();
-    AlignmentI alignment = vp.getAlignment();
-    StructureSelectionManager sm = getSsm();
-    for (SequenceI seq : alignment.getSequences())
-    {
-      /*
-       * convert selected columns into sequence positions
-       */
-      int[] positions = new int[cols.size()];
-      int i = 0;
-      for (Integer col : cols)
-      {
-        positions[i++] = seq.findPosition(col);
-      }
-      sm.highlightStructure(this, seq, positions);
-    }
-  }
-
-  /**
    * Constructs and send commands to Chimera to set attributes on residues for
    * features visible in Jalview.
    * <p>