From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Thu, 14 Dec 2006 18:58:27 +0000 (+0000)
Subject: refactored org to uk
X-Git-Tag: Release_0.2~222
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=667c5f732b74c1a0e0ac50cd26d93634811663ee;p=vamsas.git

refactored org to uk

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@298 be28352e-c001-0410-b1a7-c7978e42abec
---

diff --git a/src/uk/ac/vamsas/objects/core/.castor.cdr b/src/uk/ac/vamsas/objects/core/.castor.cdr
index 8ec2cf3..4bb6a9a 100644
--- a/src/uk/ac/vamsas/objects/core/.castor.cdr
+++ b/src/uk/ac/vamsas/objects/core/.castor.cdr
@@ -1,3 +1,3 @@
 -- listing properties --
-org.vamsas.objects.core.LockFile=org.vamsas.objects.core.LockFileDescr...
-org.vamsas.objects.core.VamsasDocument=org.vamsas.objects.core.VamsasDocumen...
+uk.ac.vamsas.objects.core.LockFile=uk.ac.vamsas.objects.core.LockFileDes...
+uk.ac.vamsas.objects.core.VamsasDocument=uk.ac.vamsas.objects.core.VamsasDocum...
diff --git a/src/uk/ac/vamsas/objects/core/Alignment.java b/src/uk/ac/vamsas/objects/core/Alignment.java
index b3ded14..2bb5ae7 100644
--- a/src/uk/ac/vamsas/objects/core/Alignment.java
+++ b/src/uk/ac/vamsas/objects/core/Alignment.java
@@ -2,7 +2,7 @@
  * This class was automatically generated with 
  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
  * Schema.
- * $Id:Alignment.java 264 2006-12-14 17:42:54Z JimP $
+ * $Id$
  */
 
 package uk.ac.vamsas.objects.core;
@@ -26,7 +26,7 @@ import org.xml.sax.ContentHandler;
 /**
  * Class Alignment.
  * 
- * @version $Revision:264 $ $Date:2006-12-14 17:42:54 +0000 (Thu, 14 Dec 2006) $
+ * @version $Revision$ $Date$
  */
 public class Alignment extends uk.ac.vamsas.client.Vobject 
 implements java.io.Serializable
diff --git a/src/uk/ac/vamsas/objects/core/AlignmentDescriptor.java b/src/uk/ac/vamsas/objects/core/AlignmentDescriptor.java
index 16c60ca..4589e43 100644
--- a/src/uk/ac/vamsas/objects/core/AlignmentDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/AlignmentDescriptor.java
@@ -2,7 +2,7 @@
  * This class was automatically generated with 
  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
  * Schema.
- * $Id:AlignmentDescriptor.java 264 2006-12-14 17:42:54Z JimP $
+ * $Id$
  */
 
 package uk.ac.vamsas.objects.core;
@@ -19,7 +19,7 @@ import org.exolab.castor.xml.validators.*;
 /**
  * Class AlignmentDescriptor.
  * 
- * @version $Revision:264 $ $Date:2006-12-14 17:42:54 +0000 (Thu, 14 Dec 2006) $
+ * @version $Revision$ $Date$
  */
 public class AlignmentDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {
 
diff --git a/src/uk/ac/vamsas/objects/core/AlignmentSequence.java b/src/uk/ac/vamsas/objects/core/AlignmentSequence.java
index 6e611a3..b1fdd53 100644
--- a/src/uk/ac/vamsas/objects/core/AlignmentSequence.java
+++ b/src/uk/ac/vamsas/objects/core/AlignmentSequence.java
@@ -2,7 +2,7 @@
  * This class was automatically generated with 
  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
  * Schema.
- * $Id:AlignmentSequence.java 264 2006-12-14 17:42:54Z JimP $
+ * $Id$
  */
 
 package uk.ac.vamsas.objects.core;
@@ -26,7 +26,7 @@ import org.xml.sax.ContentHandler;
 /**
  * Class AlignmentSequence.
  * 
- * @version $Revision:264 $ $Date:2006-12-14 17:42:54 +0000 (Thu, 14 Dec 2006) $
+ * @version $Revision$ $Date$
  */
 public class AlignmentSequence extends uk.ac.vamsas.objects.core.SequenceType 
 implements java.io.Serializable
diff --git a/src/uk/ac/vamsas/objects/core/AlignmentSequenceDescriptor.java b/src/uk/ac/vamsas/objects/core/AlignmentSequenceDescriptor.java
index 48fd08f..bb30ab7 100644
--- a/src/uk/ac/vamsas/objects/core/AlignmentSequenceDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/AlignmentSequenceDescriptor.java
@@ -2,7 +2,7 @@
  * This class was automatically generated with 
  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
  * Schema.
- * $Id:AlignmentSequenceDescriptor.java 264 2006-12-14 17:42:54Z JimP $
+ * $Id$
  */
 
 package uk.ac.vamsas.objects.core;
@@ -19,7 +19,7 @@ import org.exolab.castor.xml.validators.*;
 /**
  * Class AlignmentSequenceDescriptor.
  * 
- * @version $Revision:264 $ $Date:2006-12-14 17:42:54 +0000 (Thu, 14 Dec 2006) $
+ * @version $Revision$ $Date$
  */
 public class AlignmentSequenceDescriptor extends uk.ac.vamsas.objects.core.SequenceTypeDescriptor {
 
diff --git a/src/uk/ac/vamsas/objects/core/AnnotationElement.java b/src/uk/ac/vamsas/objects/core/AnnotationElement.java
index 42969e3..ff2e6fb 100644
--- a/src/uk/ac/vamsas/objects/core/AnnotationElement.java
+++ b/src/uk/ac/vamsas/objects/core/AnnotationElement.java
@@ -2,7 +2,7 @@
  * This class was automatically generated with 
  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
  * Schema.
- * $Id:AnnotationElement.java 264 2006-12-14 17:42:54Z JimP $
+ * $Id$
  */
 
 package uk.ac.vamsas.objects.core;
@@ -26,7 +26,7 @@ import org.xml.sax.ContentHandler;
 /**
  * Class AnnotationElement.
  * 
- * @version $Revision:264 $ $Date:2006-12-14 17:42:54 +0000 (Thu, 14 Dec 2006) $
+ * @version $Revision$ $Date$
  */
 public class AnnotationElement extends uk.ac.vamsas.client.Vobject 
 implements java.io.Serializable
diff --git a/src/uk/ac/vamsas/objects/core/AnnotationElementDescriptor.java b/src/uk/ac/vamsas/objects/core/AnnotationElementDescriptor.java
index 117f585..0dc10d3 100644
--- a/src/uk/ac/vamsas/objects/core/AnnotationElementDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/AnnotationElementDescriptor.java
@@ -2,7 +2,7 @@
  * This class was automatically generated with 
  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
  * Schema.
- * $Id:AnnotationElementDescriptor.java 264 2006-12-14 17:42:54Z JimP $
+ * $Id$
  */
 
 package uk.ac.vamsas.objects.core;
@@ -19,7 +19,7 @@ import org.exolab.castor.xml.validators.*;
 /**
  * Class AnnotationElementDescriptor.
  * 
- * @version $Revision:264 $ $Date:2006-12-14 17:42:54 +0000 (Thu, 14 Dec 2006) $
+ * @version $Revision$ $Date$
  */
 public class AnnotationElementDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {
 
diff --git a/src/uk/ac/vamsas/objects/core/ApplicationData.java b/src/uk/ac/vamsas/objects/core/ApplicationData.java
index 1e204e6..69b9853 100644
--- a/src/uk/ac/vamsas/objects/core/ApplicationData.java
+++ b/src/uk/ac/vamsas/objects/core/ApplicationData.java
@@ -2,7 +2,7 @@
  * This class was automatically generated with 
  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
  * Schema.
- * $Id:ApplicationData.java 264 2006-12-14 17:42:54Z JimP $
+ * $Id$
  */
 
 package uk.ac.vamsas.objects.core;
@@ -26,7 +26,7 @@ import org.xml.sax.ContentHandler;
 /**
  * Class ApplicationData.
  * 
- * @version $Revision:264 $ $Date:2006-12-14 17:42:54 +0000 (Thu, 14 Dec 2006) $
+ * @version $Revision$ $Date$
  */
 public class ApplicationData extends uk.ac.vamsas.objects.core.AppData 
 implements java.io.Serializable
diff --git a/src/uk/ac/vamsas/objects/core/ApplicationDataDescriptor.java b/src/uk/ac/vamsas/objects/core/ApplicationDataDescriptor.java
index 412820b..01bcfe3 100644
--- a/src/uk/ac/vamsas/objects/core/ApplicationDataDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/ApplicationDataDescriptor.java
@@ -2,7 +2,7 @@
  * This class was automatically generated with 
  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
  * Schema.
- * $Id:ApplicationDataDescriptor.java 264 2006-12-14 17:42:54Z JimP $
+ * $Id$
  */
 
 package uk.ac.vamsas.objects.core;
@@ -19,7 +19,7 @@ import org.exolab.castor.xml.validators.*;
 /**
  * Class ApplicationDataDescriptor.
  * 
- * @version $Revision:264 $ $Date:2006-12-14 17:42:54 +0000 (Thu, 14 Dec 2006) $
+ * @version $Revision$ $Date$
  */
 public class ApplicationDataDescriptor extends uk.ac.vamsas.objects.core.AppDataDescriptor {
 
diff --git a/src/uk/ac/vamsas/objects/core/DataSet.java b/src/uk/ac/vamsas/objects/core/DataSet.java
index a215b61..2d627e3 100644
--- a/src/uk/ac/vamsas/objects/core/DataSet.java
+++ b/src/uk/ac/vamsas/objects/core/DataSet.java
@@ -2,7 +2,7 @@
  * This class was automatically generated with 
  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
  * Schema.
- * $Id:DataSet.java 264 2006-12-14 17:42:54Z JimP $
+ * $Id$
  */
 
 package uk.ac.vamsas.objects.core;
@@ -26,7 +26,7 @@ import org.xml.sax.ContentHandler;
 /**
  * Class DataSet.
  * 
- * @version $Revision:264 $ $Date:2006-12-14 17:42:54 +0000 (Thu, 14 Dec 2006) $
+ * @version $Revision$ $Date$
  */
 public class DataSet extends uk.ac.vamsas.client.Vobject 
 implements java.io.Serializable
diff --git a/src/uk/ac/vamsas/objects/core/DataSetAnnotations.java b/src/uk/ac/vamsas/objects/core/DataSetAnnotations.java
index f6ccd0e..0507d37 100644
--- a/src/uk/ac/vamsas/objects/core/DataSetAnnotations.java
+++ b/src/uk/ac/vamsas/objects/core/DataSetAnnotations.java
@@ -2,7 +2,7 @@
  * This class was automatically generated with 
  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
  * Schema.
- * $Id:DataSetAnnotations.java 264 2006-12-14 17:42:54Z JimP $
+ * $Id$
  */
 
 package uk.ac.vamsas.objects.core;
@@ -24,7 +24,7 @@ import org.xml.sax.ContentHandler;
 /**
  * Class DataSetAnnotations.
  * 
- * @version $Revision:264 $ $Date:2006-12-14 17:42:54 +0000 (Thu, 14 Dec 2006) $
+ * @version $Revision$ $Date$
  */
 public class DataSetAnnotations extends uk.ac.vamsas.objects.core.RangeAnnotation 
 implements java.io.Serializable
diff --git a/src/uk/ac/vamsas/objects/core/DataSetAnnotationsDescriptor.java b/src/uk/ac/vamsas/objects/core/DataSetAnnotationsDescriptor.java
index 3425525..3286df7 100644
--- a/src/uk/ac/vamsas/objects/core/DataSetAnnotationsDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/DataSetAnnotationsDescriptor.java
@@ -2,7 +2,7 @@
  * This class was automatically generated with 
  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
  * Schema.
- * $Id:DataSetAnnotationsDescriptor.java 264 2006-12-14 17:42:54Z JimP $
+ * $Id$
  */
 
 package uk.ac.vamsas.objects.core;
@@ -19,7 +19,7 @@ import org.exolab.castor.xml.validators.*;
 /**
  * Class DataSetAnnotationsDescriptor.
  * 
- * @version $Revision:264 $ $Date:2006-12-14 17:42:54 +0000 (Thu, 14 Dec 2006) $
+ * @version $Revision$ $Date$
  */
 public class DataSetAnnotationsDescriptor extends uk.ac.vamsas.objects.core.RangeAnnotationDescriptor {
 
diff --git a/src/uk/ac/vamsas/objects/core/DataSetDescriptor.java b/src/uk/ac/vamsas/objects/core/DataSetDescriptor.java
index 8e1fd5f..a920361 100644
--- a/src/uk/ac/vamsas/objects/core/DataSetDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/DataSetDescriptor.java
@@ -2,7 +2,7 @@
  * This class was automatically generated with 
  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
  * Schema.
- * $Id:DataSetDescriptor.java 264 2006-12-14 17:42:54Z JimP $
+ * $Id$
  */
 
 package uk.ac.vamsas.objects.core;
@@ -19,7 +19,7 @@ import org.exolab.castor.xml.validators.*;
 /**
  * Class DataSetDescriptor.
  * 
- * @version $Revision:264 $ $Date:2006-12-14 17:42:54 +0000 (Thu, 14 Dec 2006) $
+ * @version $Revision$ $Date$
  */
 public class DataSetDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {
 
diff --git a/src/uk/ac/vamsas/objects/core/DbRef.java b/src/uk/ac/vamsas/objects/core/DbRef.java
index 2d064f0..5b69fd5 100644
--- a/src/uk/ac/vamsas/objects/core/DbRef.java
+++ b/src/uk/ac/vamsas/objects/core/DbRef.java
@@ -2,7 +2,7 @@
  * This class was automatically generated with 
  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
  * Schema.
- * $Id:DbRef.java 264 2006-12-14 17:42:54Z JimP $
+ * $Id$
  */
 
 package uk.ac.vamsas.objects.core;
@@ -28,7 +28,7 @@ import org.xml.sax.ContentHandler;
  *  for this sequence record - with optional mapping
  *  from database sequence to the given sequence record 
  * 
- * @version $Revision:264 $ $Date:2006-12-14 17:42:54 +0000 (Thu, 14 Dec 2006) $
+ * @version $Revision$ $Date$
  */
 public class DbRef extends uk.ac.vamsas.client.Vobject 
 implements java.io.Serializable
diff --git a/src/uk/ac/vamsas/objects/core/DbRefDescriptor.java b/src/uk/ac/vamsas/objects/core/DbRefDescriptor.java
index 266acb8..563ed4b 100644
--- a/src/uk/ac/vamsas/objects/core/DbRefDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/DbRefDescriptor.java
@@ -2,7 +2,7 @@
  * This class was automatically generated with 
  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
  * Schema.
- * $Id:DbRefDescriptor.java 264 2006-12-14 17:42:54Z JimP $
+ * $Id$
  */
 
 package uk.ac.vamsas.objects.core;
@@ -19,7 +19,7 @@ import org.exolab.castor.xml.validators.*;
 /**
  * Class DbRefDescriptor.
  * 
- * @version $Revision:264 $ $Date:2006-12-14 17:42:54 +0000 (Thu, 14 Dec 2006) $
+ * @version $Revision$ $Date$
  */
 public class DbRefDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {
 
diff --git a/src/uk/ac/vamsas/objects/core/Entry.java b/src/uk/ac/vamsas/objects/core/Entry.java
index 350443c..6def10e 100644
--- a/src/uk/ac/vamsas/objects/core/Entry.java
+++ b/src/uk/ac/vamsas/objects/core/Entry.java
@@ -2,7 +2,7 @@
  * This class was automatically generated with 
  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
  * Schema.
- * $Id:Entry.java 264 2006-12-14 17:42:54Z JimP $
+ * $Id$
  */
 
 package uk.ac.vamsas.objects.core;
@@ -26,7 +26,7 @@ import org.xml.sax.ContentHandler;
 /**
  * Class Entry.
  * 
- * @version $Revision:264 $ $Date:2006-12-14 17:42:54 +0000 (Thu, 14 Dec 2006) $
+ * @version $Revision$ $Date$
  */
 public class Entry extends uk.ac.vamsas.client.Vobject 
 implements java.io.Serializable
diff --git a/src/uk/ac/vamsas/objects/core/EntryDescriptor.java b/src/uk/ac/vamsas/objects/core/EntryDescriptor.java
index 30c539b..c5fdc00 100644
--- a/src/uk/ac/vamsas/objects/core/EntryDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/EntryDescriptor.java
@@ -2,7 +2,7 @@
  * This class was automatically generated with 
  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
  * Schema.
- * $Id:EntryDescriptor.java 264 2006-12-14 17:42:54Z JimP $
+ * $Id$
  */
 
 package uk.ac.vamsas.objects.core;
@@ -19,7 +19,7 @@ import org.exolab.castor.xml.validators.*;
 /**
  * Class EntryDescriptor.
  * 
- * @version $Revision:264 $ $Date:2006-12-14 17:42:54 +0000 (Thu, 14 Dec 2006) $
+ * @version $Revision$ $Date$
  */
 public class EntryDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {
 
diff --git a/src/uk/ac/vamsas/objects/core/LockFile.java b/src/uk/ac/vamsas/objects/core/LockFile.java
index b187a92..d2dcb60 100644
--- a/src/uk/ac/vamsas/objects/core/LockFile.java
+++ b/src/uk/ac/vamsas/objects/core/LockFile.java
@@ -2,7 +2,7 @@
  * This class was automatically generated with 
  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
  * Schema.
- * $Id:LockFile.java 264 2006-12-14 17:42:54Z JimP $
+ * $Id$
  */
 
 package uk.ac.vamsas.objects.core;
@@ -24,7 +24,7 @@ import org.xml.sax.ContentHandler;
 /**
  * Class LockFile.
  * 
- * @version $Revision:264 $ $Date:2006-12-14 17:42:54 +0000 (Thu, 14 Dec 2006) $
+ * @version $Revision$ $Date$
  */
 public class LockFile extends uk.ac.vamsas.client.Vobject 
 implements java.io.Serializable
diff --git a/src/uk/ac/vamsas/objects/core/LockFileDescriptor.java b/src/uk/ac/vamsas/objects/core/LockFileDescriptor.java
index a8cb965..daa075d 100644
--- a/src/uk/ac/vamsas/objects/core/LockFileDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/LockFileDescriptor.java
@@ -2,7 +2,7 @@
  * This class was automatically generated with 
  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
  * Schema.
- * $Id:LockFileDescriptor.java 264 2006-12-14 17:42:54Z JimP $
+ * $Id$
  */
 
 package uk.ac.vamsas.objects.core;
@@ -19,7 +19,7 @@ import org.exolab.castor.xml.validators.*;
 /**
  * Class LockFileDescriptor.
  * 
- * @version $Revision:264 $ $Date:2006-12-14 17:42:54 +0000 (Thu, 14 Dec 2006) $
+ * @version $Revision$ $Date$
  */
 public class LockFileDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {
 
diff --git a/src/uk/ac/vamsas/objects/core/Newick.java b/src/uk/ac/vamsas/objects/core/Newick.java
index 581bdca..7e9f372 100644
--- a/src/uk/ac/vamsas/objects/core/Newick.java
+++ b/src/uk/ac/vamsas/objects/core/Newick.java
@@ -2,7 +2,7 @@
  * This class was automatically generated with 
  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
  * Schema.
- * $Id:Newick.java 264 2006-12-14 17:42:54Z JimP $
+ * $Id$
  */
 
 package uk.ac.vamsas.objects.core;
@@ -24,7 +24,7 @@ import org.xml.sax.ContentHandler;
 /**
  * Class Newick.
  * 
- * @version $Revision:264 $ $Date:2006-12-14 17:42:54 +0000 (Thu, 14 Dec 2006) $
+ * @version $Revision$ $Date$
  */
 public class Newick extends uk.ac.vamsas.client.Vobject 
 implements java.io.Serializable
diff --git a/src/uk/ac/vamsas/objects/core/NewickDescriptor.java b/src/uk/ac/vamsas/objects/core/NewickDescriptor.java
index dbc4ef5..8f9985e 100644
--- a/src/uk/ac/vamsas/objects/core/NewickDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/NewickDescriptor.java
@@ -2,7 +2,7 @@
  * This class was automatically generated with 
  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
  * Schema.
- * $Id:NewickDescriptor.java 264 2006-12-14 17:42:54Z JimP $
+ * $Id$
  */
 
 package uk.ac.vamsas.objects.core;
@@ -19,7 +19,7 @@ import org.exolab.castor.xml.validators.*;
 /**
  * Class NewickDescriptor.
  * 
- * @version $Revision:264 $ $Date:2006-12-14 17:42:54 +0000 (Thu, 14 Dec 2006) $
+ * @version $Revision$ $Date$
  */
 public class NewickDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {
 
diff --git a/src/uk/ac/vamsas/objects/core/Provenance.java b/src/uk/ac/vamsas/objects/core/Provenance.java
index d5daa1f..4eb591d 100644
--- a/src/uk/ac/vamsas/objects/core/Provenance.java
+++ b/src/uk/ac/vamsas/objects/core/Provenance.java
@@ -2,7 +2,7 @@
  * This class was automatically generated with 
  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
  * Schema.
- * $Id:Provenance.java 264 2006-12-14 17:42:54Z JimP $
+ * $Id$
  */
 
 package uk.ac.vamsas.objects.core;
@@ -26,7 +26,7 @@ import org.xml.sax.ContentHandler;
 /**
  * Class Provenance.
  * 
- * @version $Revision:264 $ $Date:2006-12-14 17:42:54 +0000 (Thu, 14 Dec 2006) $
+ * @version $Revision$ $Date$
  */
 public class Provenance extends uk.ac.vamsas.client.Vobject 
 implements java.io.Serializable
diff --git a/src/uk/ac/vamsas/objects/core/ProvenanceDescriptor.java b/src/uk/ac/vamsas/objects/core/ProvenanceDescriptor.java
index e5e3b80..f2a4b5d 100644
--- a/src/uk/ac/vamsas/objects/core/ProvenanceDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/ProvenanceDescriptor.java
@@ -2,7 +2,7 @@
  * This class was automatically generated with 
  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
  * Schema.
- * $Id:ProvenanceDescriptor.java 264 2006-12-14 17:42:54Z JimP $
+ * $Id$
  */
 
 package uk.ac.vamsas.objects.core;
@@ -19,7 +19,7 @@ import org.exolab.castor.xml.validators.*;
 /**
  * Class ProvenanceDescriptor.
  * 
- * @version $Revision:264 $ $Date:2006-12-14 17:42:54 +0000 (Thu, 14 Dec 2006) $
+ * @version $Revision$ $Date$
  */
 public class ProvenanceDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {
 
diff --git a/src/uk/ac/vamsas/objects/core/RangeType.java b/src/uk/ac/vamsas/objects/core/RangeType.java
index a0f457e..3fc8fe1 100644
--- a/src/uk/ac/vamsas/objects/core/RangeType.java
+++ b/src/uk/ac/vamsas/objects/core/RangeType.java
@@ -31,7 +31,7 @@ import org.exolab.castor.xml.ValidationException;
  * 
  * @version $Revision$ $Date$
  */
-public abstract class RangeType extends uk.ac.vamsas.clientnt.Vobject 
+public abstract class RangeType extends uk.ac.vamsas.client.Vobject 
 implements java.io.Serializable
 {
 
diff --git a/src/uk/ac/vamsas/objects/core/Sequence.java b/src/uk/ac/vamsas/objects/core/Sequence.java
index 85b546b..1a23512 100644
--- a/src/uk/ac/vamsas/objects/core/Sequence.java
+++ b/src/uk/ac/vamsas/objects/core/Sequence.java
@@ -2,7 +2,7 @@
  * This class was automatically generated with 
  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
  * Schema.
- * $Id:Sequence.java 264 2006-12-14 17:42:54Z JimP $
+ * $Id$
  */
 
 package uk.ac.vamsas.objects.core;
@@ -26,7 +26,7 @@ import org.xml.sax.ContentHandler;
 /**
  * Class Sequence.
  * 
- * @version $Revision:264 $ $Date:2006-12-14 17:42:54 +0000 (Thu, 14 Dec 2006) $
+ * @version $Revision$ $Date$
  */
 public class Sequence extends uk.ac.vamsas.objects.core.SequenceType 
 implements java.io.Serializable
diff --git a/src/uk/ac/vamsas/objects/core/SequenceDescriptor.java b/src/uk/ac/vamsas/objects/core/SequenceDescriptor.java
index 335df7b..5b2e4b3 100644
--- a/src/uk/ac/vamsas/objects/core/SequenceDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/SequenceDescriptor.java
@@ -2,7 +2,7 @@
  * This class was automatically generated with 
  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
  * Schema.
- * $Id:SequenceDescriptor.java 264 2006-12-14 17:42:54Z JimP $
+ * $Id$
  */
 
 package uk.ac.vamsas.objects.core;
@@ -19,7 +19,7 @@ import org.exolab.castor.xml.validators.*;
 /**
  * Class SequenceDescriptor.
  * 
- * @version $Revision:264 $ $Date:2006-12-14 17:42:54 +0000 (Thu, 14 Dec 2006) $
+ * @version $Revision$ $Date$
  */
 public class SequenceDescriptor extends uk.ac.vamsas.objects.core.SequenceTypeDescriptor {
 
diff --git a/src/uk/ac/vamsas/objects/core/SequenceType.java b/src/uk/ac/vamsas/objects/core/SequenceType.java
index fccd850..55efd85 100644
--- a/src/uk/ac/vamsas/objects/core/SequenceType.java
+++ b/src/uk/ac/vamsas/objects/core/SequenceType.java
@@ -2,7 +2,7 @@
  * This class was automatically generated with 
  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
  * Schema.
- * $Id:SequenceType.java 264 2006-12-14 17:42:54Z JimP $
+ * $Id$
  */
 
 package uk.ac.vamsas.objects.core;
@@ -26,7 +26,7 @@ import org.xml.sax.ContentHandler;
 /**
  * Class SequenceType.
  * 
- * @version $Revision:264 $ $Date:2006-12-14 17:42:54 +0000 (Thu, 14 Dec 2006) $
+ * @version $Revision$ $Date$
  */
 public class SequenceType extends uk.ac.vamsas.client.Vobject 
 implements java.io.Serializable
diff --git a/src/uk/ac/vamsas/objects/core/SequenceTypeDescriptor.java b/src/uk/ac/vamsas/objects/core/SequenceTypeDescriptor.java
index bac53b2..4aa4a86 100644
--- a/src/uk/ac/vamsas/objects/core/SequenceTypeDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/SequenceTypeDescriptor.java
@@ -2,7 +2,7 @@
  * This class was automatically generated with 
  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
  * Schema.
- * $Id:SequenceTypeDescriptor.java 264 2006-12-14 17:42:54Z JimP $
+ * $Id$
  */
 
 package uk.ac.vamsas.objects.core;
@@ -19,7 +19,7 @@ import org.exolab.castor.xml.validators.*;
 /**
  * Class SequenceTypeDescriptor.
  * 
- * @version $Revision:264 $ $Date:2006-12-14 17:42:54 +0000 (Thu, 14 Dec 2006) $
+ * @version $Revision$ $Date$
  */
 public class SequenceTypeDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {
 
diff --git a/src/uk/ac/vamsas/objects/core/Tree.java b/src/uk/ac/vamsas/objects/core/Tree.java
index 5505ffe..3b52110 100644
--- a/src/uk/ac/vamsas/objects/core/Tree.java
+++ b/src/uk/ac/vamsas/objects/core/Tree.java
@@ -2,7 +2,7 @@
  * This class was automatically generated with 
  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
  * Schema.
- * $Id:Tree.java 264 2006-12-14 17:42:54Z JimP $
+ * $Id$
  */
 
 package uk.ac.vamsas.objects.core;
@@ -26,7 +26,7 @@ import org.xml.sax.ContentHandler;
 /**
  * Class Tree.
  * 
- * @version $Revision:264 $ $Date:2006-12-14 17:42:54 +0000 (Thu, 14 Dec 2006) $
+ * @version $Revision$ $Date$
  */
 public class Tree extends uk.ac.vamsas.client.Vobject 
 implements java.io.Serializable
diff --git a/src/uk/ac/vamsas/objects/core/TreeDescriptor.java b/src/uk/ac/vamsas/objects/core/TreeDescriptor.java
index a4df62f..c635f74 100644
--- a/src/uk/ac/vamsas/objects/core/TreeDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/TreeDescriptor.java
@@ -2,7 +2,7 @@
  * This class was automatically generated with 
  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
  * Schema.
- * $Id:TreeDescriptor.java 264 2006-12-14 17:42:54Z JimP $
+ * $Id$
  */
 
 package uk.ac.vamsas.objects.core;
@@ -19,7 +19,7 @@ import org.exolab.castor.xml.validators.*;
 /**
  * Class TreeDescriptor.
  * 
- * @version $Revision:264 $ $Date:2006-12-14 17:42:54 +0000 (Thu, 14 Dec 2006) $
+ * @version $Revision$ $Date$
  */
 public class TreeDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {
 
diff --git a/src/uk/ac/vamsas/objects/core/User.java b/src/uk/ac/vamsas/objects/core/User.java
index 75d2044..424bb27 100644
--- a/src/uk/ac/vamsas/objects/core/User.java
+++ b/src/uk/ac/vamsas/objects/core/User.java
@@ -2,7 +2,7 @@
  * This class was automatically generated with 
  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
  * Schema.
- * $Id:User.java 264 2006-12-14 17:42:54Z JimP $
+ * $Id$
  */
 
 package uk.ac.vamsas.objects.core;
@@ -24,7 +24,7 @@ import org.xml.sax.ContentHandler;
 /**
  * Class User.
  * 
- * @version $Revision:264 $ $Date:2006-12-14 17:42:54 +0000 (Thu, 14 Dec 2006) $
+ * @version $Revision$ $Date$
  */
 public class User extends uk.ac.vamsas.objects.core.AppData 
 implements java.io.Serializable
diff --git a/src/uk/ac/vamsas/objects/core/UserDescriptor.java b/src/uk/ac/vamsas/objects/core/UserDescriptor.java
index 1666472..1d23629 100644
--- a/src/uk/ac/vamsas/objects/core/UserDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/UserDescriptor.java
@@ -2,7 +2,7 @@
  * This class was automatically generated with 
  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
  * Schema.
- * $Id:UserDescriptor.java 264 2006-12-14 17:42:54Z JimP $
+ * $Id$
  */
 
 package uk.ac.vamsas.objects.core;
@@ -19,7 +19,7 @@ import org.exolab.castor.xml.validators.*;
 /**
  * Class UserDescriptor.
  * 
- * @version $Revision:264 $ $Date:2006-12-14 17:42:54 +0000 (Thu, 14 Dec 2006) $
+ * @version $Revision$ $Date$
  */
 public class UserDescriptor extends uk.ac.vamsas.objects.core.AppDataDescriptor {
 
diff --git a/src/uk/ac/vamsas/objects/core/VAMSAS.java b/src/uk/ac/vamsas/objects/core/VAMSAS.java
index 2c8edc6..155e0a4 100644
--- a/src/uk/ac/vamsas/objects/core/VAMSAS.java
+++ b/src/uk/ac/vamsas/objects/core/VAMSAS.java
@@ -2,7 +2,7 @@
  * This class was automatically generated with 
  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
  * Schema.
- * $Id:VAMSAS.java 264 2006-12-14 17:42:54Z JimP $
+ * $Id$
  */
 
 package uk.ac.vamsas.objects.core;
@@ -27,7 +27,7 @@ import org.xml.sax.ContentHandler;
  * contains unassociated trees and a number of analysis sets
  *  
  * 
- * @version $Revision:264 $ $Date:2006-12-14 17:42:54 +0000 (Thu, 14 Dec 2006) $
+ * @version $Revision$ $Date$
  */
 public class VAMSAS extends uk.ac.vamsas.client.Vobject 
 implements java.io.Serializable
diff --git a/src/uk/ac/vamsas/objects/core/VAMSASDescriptor.java b/src/uk/ac/vamsas/objects/core/VAMSASDescriptor.java
index 6569aed..8c518ba 100644
--- a/src/uk/ac/vamsas/objects/core/VAMSASDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/VAMSASDescriptor.java
@@ -2,7 +2,7 @@
  * This class was automatically generated with 
  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
  * Schema.
- * $Id:VAMSASDescriptor.java 264 2006-12-14 17:42:54Z JimP $
+ * $Id$
  */
 
 package uk.ac.vamsas.objects.core;
@@ -19,7 +19,7 @@ import org.exolab.castor.xml.validators.*;
 /**
  * Class VAMSASDescriptor.
  * 
- * @version $Revision:264 $ $Date:2006-12-14 17:42:54 +0000 (Thu, 14 Dec 2006) $
+ * @version $Revision$ $Date$
  */
 public class VAMSASDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {
 
diff --git a/src/uk/ac/vamsas/objects/core/VamsasDocument.java b/src/uk/ac/vamsas/objects/core/VamsasDocument.java
index 961934b..8da041c 100644
--- a/src/uk/ac/vamsas/objects/core/VamsasDocument.java
+++ b/src/uk/ac/vamsas/objects/core/VamsasDocument.java
@@ -2,7 +2,7 @@
  * This class was automatically generated with 
  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
  * Schema.
- * $Id:VamsasDocument.java 264 2006-12-14 17:42:54Z JimP $
+ * $Id$
  */
 
 package uk.ac.vamsas.objects.core;
@@ -26,7 +26,7 @@ import org.xml.sax.ContentHandler;
 /**
  * Class VamsasDocument.
  * 
- * @version $Revision:264 $ $Date:2006-12-14 17:42:54 +0000 (Thu, 14 Dec 2006) $
+ * @version $Revision$ $Date$
  */
 public class VamsasDocument extends uk.ac.vamsas.client.Vobject 
 implements java.io.Serializable
diff --git a/src/uk/ac/vamsas/objects/core/VamsasDocumentDescriptor.java b/src/uk/ac/vamsas/objects/core/VamsasDocumentDescriptor.java
index 7c28d01..093b688 100644
--- a/src/uk/ac/vamsas/objects/core/VamsasDocumentDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/VamsasDocumentDescriptor.java
@@ -2,7 +2,7 @@
  * This class was automatically generated with 
  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
  * Schema.
- * $Id:VamsasDocumentDescriptor.java 264 2006-12-14 17:42:54Z JimP $
+ * $Id$
  */
 
 package uk.ac.vamsas.objects.core;
@@ -19,7 +19,7 @@ import org.exolab.castor.xml.validators.*;
 /**
  * Class VamsasDocumentDescriptor.
  * 
- * @version $Revision:264 $ $Date:2006-12-14 17:42:54 +0000 (Thu, 14 Dec 2006) $
+ * @version $Revision$ $Date$
  */
 public class VamsasDocumentDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {