From: hansonr <hansonr@stolaf.edu>
Date: Wed, 27 Jun 2018 12:02:24 +0000 (+0100)
Subject: JAL-3026 FileParser for JFileChooser results as ByteArrayInputStream;
X-Git-Tag: Release_2_11_4_0~45^2~18^2~628
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=685b0a8164c4cd8ba50abb4eb0ea55edf26705fe;p=jalview.git

JAL-3026 FileParser for JFileChooser results as ByteArrayInputStream;
does not imply text.
---

diff --git a/src/jalview/io/FileParse.java b/src/jalview/io/FileParse.java
index 7e1940f..bb03b35 100755
--- a/src/jalview/io/FileParse.java
+++ b/src/jalview/io/FileParse.java
@@ -27,6 +27,7 @@ import jalview.api.FeatureSettingsModelI;
 import jalview.util.MessageManager;
 
 import java.io.BufferedReader;
+import java.io.ByteArrayInputStream;
 import java.io.File;
 import java.io.FileInputStream;
 import java.io.FileReader;
@@ -348,7 +349,7 @@ public class FileParse
       {
         // this will be from JavaScript
         inFile = file;
-        dataIn = new BufferedReader(new StringReader(new String(bytes)));
+        dataIn = new BufferedReader(new java.io.InputStreamReader(new ByteArrayInputStream(bytes)));
         dataName = fileStr;
       }
       else if (checkFileSource(fileStr))
@@ -384,8 +385,8 @@ public class FileParse
        * 
        */
 
-      System.out.println(data);
       dataIn = Rdr.getBR(data);
+      
       dataName = fileStr;
 
     }