From: Fábio Madeira Date: Mon, 13 Feb 2017 17:33:25 +0000 (+0000) Subject: JWS-110 & JWS-109 Added a new downloads (static) page that avoids the signin/registra... X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=6890ba04d3b927a31438a40d9a49388d3e203317;p=jabaws.git JWS-110 & JWS-109 Added a new downloads (static) page that avoids the signin/registration process. --- diff --git a/website/download.jsp b/website/download.jsp new file mode 100644 index 0000000..e2c7405 --- /dev/null +++ b/website/download.jsp @@ -0,0 +1,192 @@ +<%----%> +<%--<%@ page language="java" contentType="text/html; charset=ISO-8859-1" pageEncoding="ISO-8859-1"%>--%> + +<%@ taglib prefix="c" uri="http://java.sun.com/jsp/jstl/core" %> +<%@ taglib uri="http://java.sun.com/jsp/jstl/functions" prefix="fn" %> +<%@ taglib uri="http://java.sun.com/jsp/jstl/fmt" prefix="fmt" %> +<%@ taglib uri="http://displaytag.sf.net" prefix="dt" %> + + + + Download + + +
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JABAWS Server Virtual Appliance (VA)

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+ The JABAWS virtual appliance (VA) is a way of running a fully functional JABAWS instance + on your own computer. In order to use the VA, you have to install software from VMWare to run + the virtual machine. We recommend VMWare Player + which is available for free for Windows and Linux users. Once the VA is running, you can + configure Jalview to use your local + JABAWS VA with + these instructions. +

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  • JABAWS Virtual Appliance: download (593Mb)
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  • Additional Virtual disk with the UniRef database: + download (2.3Gb)
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+ Please check the JABAWS manual + for further instructions. +

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+ Since the current version of Jpred requires a local copy of filtered (UniRef90) UniRef data + and the database is large (~5.6Gb), the JABAWS VA installation download is split into two + parts: the JABAWS server itself and an optional additional download that provides a virtual + disk containing the UniRef database for Jpred (Jpred + has been trained, optimized and tested with this UniRef database release. So, we strongly recommend + users not to use other UniRef installations!). By default the VA has an additional + empty virtual disk inside of the VA and JpredWS is not available. To enable JpredWS, download + and unpack both + the VA and + the disk file, + and replace the empty disk in the VA download (called JABAWS.2.1.0.uniref.vmdk) with the disk from the + second download (JABAWS.2.1.0.uniref.real.vmdk). Here is a list of commands for Linux users: + 

tar xzvf JABAWS210.pack.tar.gz
+gunzip JABAWS.2.1.0.uniref.real.vmdk.gz
+mv JABAWS.2.1.0.uniref.real.vmdk JABAWS210.pack/JABAWS.2.1.0.uniref.vmdk
+ After that, launch the virtual machine and the JpredWS service should be operational. +

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JABAWS Server Web Application aRchive (WAR)

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+ The JABAWS Server Web Application aRchive (WAR) version is a better way to run JABAWS if you want to deploy + JABAWS for many users, e.g. your laboratory, or if you are an experienced user and want to have more control + on JABAWS. You can also use this version for Mac and Linux computers if you do not want to use virtualization. + Finally, you can use this version on a computer cluster.
+ The server is provided as a self-contained Web + Application aRchive (WAR) containing all necessary binaries. The WAR file can be deployed on any web + application server supporting the Java servlet specification (version 2.4 or above), i.e. + Tomcat 7.0. +

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  • JABAWS WAR (includes source and precompiled Linux x86 and Windows binaries): + download (88M)
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  • Tar/gzipped UniRef90 database (for JpredWS): + UNIREFdb.tar.gz (2.3Gb)
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Installation notes:

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  1. After a default installation on Linux, all JABAWS web services should run OK, except JpredWS. + This service requires installation of the UNIREF90 database on your computer. +
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    • Download the database (UNIREFdb.tar.gz)
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    • Unpack the database and install it either in the default JABA data location (/data), + or in some other location (configured by the 'jpred.data.uniref.path' path entry in conf/Executable.properties).
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  2. If you deploy JABAWS WAR on Windows, not all web services will be functional, and you will need + a properly configured compilation environment to build the JABA binaries from source. We recommend Windows + users download and use the JABAWS VA instead.
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JABAWS Command Line Client

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+ The command line client is an executable Java program for scripting + against JABA web services. It is also useful as an example of how to + access JABAWS services if you intend to use JABAWS in your own + program, with functions demonstrating how to discover command line + parameters and presets supported by a service, and how to run, + monitor and retrieve the results of a job. + + Note: The client is used in Jalview + to autogenerate a graphical user interface for JABA services. + +

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  • Command line client +
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    • jar file with binaries (with log4j): + download (538 K)
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    • jar file with binaries (without log4j): + download (151 K)
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    • source: + download (152 K)
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+ The command line client displays help when executed without arguments, + more details is available from the jabaws client's manual pages. +

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Source Code

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+ We welcome developers who wish to develop and implement new web services for JABAWS. + JABAWS is released under the Apache License, and its source can be downloaded below. + The latest versions of JABAWS' source can also be obtained from its Git repository +
+ The repository and code archive contains the complete Eclipse JABAWS project, + but Eclipse is not necessary to build it. Please examine the Ant build file (build.xml) to build + and test JABAWS from sources. +

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+ To request a JABAWS developer account please send us an email to the + jabaws-discuss mailing list. +

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Current Version

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+ The current JABAWS version is 2.2.0 released on XX February 2017. +

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