From: Jim Procter <jprocter@issues.jalview.org>
Date: Sun, 19 Jun 2016 10:55:19 +0000 (+0100)
Subject: JAL-2110 distinct alignedcodonframe entries for tests
X-Git-Tag: Release_2_10_0~140^2~5^2~49^2~7
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=68b1e563763e0c109687506953321fd36f464396;p=jalview.git

JAL-2110 distinct alignedcodonframe entries for tests
---

diff --git a/test/jalview/structure/StructureSelectionManagerTest.java b/test/jalview/structure/StructureSelectionManagerTest.java
index 999d158..d07f919 100644
--- a/test/jalview/structure/StructureSelectionManagerTest.java
+++ b/test/jalview/structure/StructureSelectionManagerTest.java
@@ -29,6 +29,7 @@ import jalview.datamodel.SequenceFeature;
 import jalview.datamodel.SequenceI;
 import jalview.io.FormatAdapter;
 import jalview.io.StructureFile;
+import jalview.util.MapList;
 
 import java.util.ArrayList;
 import java.util.List;
@@ -51,7 +52,11 @@ public class StructureSelectionManagerTest
   public void testRegisterMapping()
   {
     AlignedCodonFrame acf1 = new AlignedCodonFrame();
+    acf1.addMap(new Sequence("s1", "ttt"), new Sequence("p1", "p"),
+            new MapList(new int[] { 1, 3 }, new int[] { 1, 1 }, 1, 1));
     AlignedCodonFrame acf2 = new AlignedCodonFrame();
+    acf2.addMap(new Sequence("s2", "ttt"), new Sequence("p2", "p"),
+            new MapList(new int[] { 1, 3 }, new int[] { 1, 1 }, 1, 1));
 
     ssm.registerMapping(acf1);
     assertEquals(1, ssm.getSequenceMappings().size());
@@ -75,8 +80,14 @@ public class StructureSelectionManagerTest
   public void testRegisterMappings()
   {
     AlignedCodonFrame acf1 = new AlignedCodonFrame();
+    acf1.addMap(new Sequence("s1", "ttt"), new Sequence("p1", "p"),
+            new MapList(new int[] { 1, 3 }, new int[] { 1, 1 }, 1, 1));
     AlignedCodonFrame acf2 = new AlignedCodonFrame();
+    acf2.addMap(new Sequence("s2", "ttt"), new Sequence("p2", "p"),
+            new MapList(new int[] { 1, 3 }, new int[] { 1, 1 }, 1, 1));
     AlignedCodonFrame acf3 = new AlignedCodonFrame();
+    acf3.addMap(new Sequence("s3", "ttt"), new Sequence("p3", "p"),
+            new MapList(new int[] { 1, 3 }, new int[] { 1, 1 }, 1, 1));
 
     List<AlignedCodonFrame> set1 = new ArrayList<AlignedCodonFrame>();
     set1.add(acf1);