From: cmzmasek <cmzmasek@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Date: Thu, 13 Mar 2014 19:02:19 +0000 (+0000)
Subject: in progress
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=68e831d62c7a1d78d1b489c147682c29ef9c2664;p=jalview.git

in progress
---

diff --git a/forester/java/src/org/forester/evoinference/distance/NeighborJoining.java b/forester/java/src/org/forester/evoinference/distance/NeighborJoining.java
index 14553ce..b4f42ea 100644
--- a/forester/java/src/org/forester/evoinference/distance/NeighborJoining.java
+++ b/forester/java/src/org/forester/evoinference/distance/NeighborJoining.java
@@ -138,19 +138,27 @@ public final class NeighborJoining {
             if ( otu1 < i ) {
                 if ( otu2 > i ) {
                     _d_values[ m_otu1 ][ m_i ] = ( _d_values[ m_otu1 ][ m_i ] + _d_values[ m_i ][ m_otu2 ] - d ) / 2;
+                   System.out.print( DF.format( _d_values[ m_otu1 ][ m_i ] )  );
                 }
                 else {
                     _d_values[ m_otu1 ][ m_i ] = ( _d_values[ m_otu1 ][ m_i ] + _d_values[ m_otu2 ][ m_i ] - d ) / 2;
+                    System.out.print( DF.format( _d_values[ m_otu1 ][ m_i ] )  );
+                    
                 }
             }
             else {
                 if ( otu2 > i ) {
                     _d_values[ m_i ][ m_otu1 ] = ( _d_values[ m_i ][ m_otu1 ] + _d_values[ m_i ][ m_otu2 ] - d ) / 2;
+                    System.out.print( DF.format(  _d_values[ m_i ][ m_otu1 ] )  );
+                    
                 }
                 else {
                     _d_values[ m_i ][ m_otu1 ] = ( _d_values[ m_i ][ m_otu1 ] + _d_values[ m_otu2 ][ m_i ] - d ) / 2;
+                    System.out.print( DF.format( _d_values[ m_otu1 ][ m_i ] )  );
+                    
                 }
             }
+            System.out.print( " " );
         }
     }