From: soares Date: Tue, 12 Nov 2019 18:08:59 +0000 (+0000) Subject: JAL-3210 multiple core templates. work in progress X-Git-Tag: Release_2_11_4_0~45^2~18^2~59 X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=68ed70b0672bed174113443b6c0516d277d8ea07;p=jalview.git JAL-3210 multiple core templates. work in progress --- diff --git a/build.gradle b/build.gradle index ec665dc..fc4d9ca 100644 --- a/build.gradle +++ b/build.gradle @@ -293,6 +293,8 @@ ext { jalviewjsTransferSiteCoreDir = string("${jalviewjsBuildDir}/tmp/${jalviewjs_site_dir}_core") jalviewjsJalviewCoreHtmlFile = string("") jalviewjsJalviewCoreName = string(jalviewjs_core_name) + jalviewjsDefaultCoreName = string(jalviewjs_default_core) + jalviewjsCoreClasslists = [] jalviewjsJalviewTemplateName = string(jalviewjs_name) eclipseWorkspace = null @@ -1296,13 +1298,6 @@ task installers(type: com.install4j.gradle.Install4jTask) { } -clean { - doFirst { - delete install4jConfFile - } -} - - task sourceDist (type: Tar) { def VERSION_UNDERSCORES = JALVIEW_VERSION.replaceAll("\\.", "_") @@ -1820,14 +1815,14 @@ DEBUG: ${eclipseDebug} } -def jalviewjsCallCore(FileCollection list, String prefixFile, String suffixFile, String jsfile, String zjsfile, File logOutFile, Boolean logOutConsole) { +def jalviewjsCallCore(String name, FileCollection list, String prefixFile, String suffixFile, String jsfile, String zjsfile, File logOutFile, Boolean logOutConsole) { def stdout = new ByteArrayOutputStream() def stderr = new ByteArrayOutputStream() def coreFile = file(jsfile) def msg = "" - msg = "Generating ${jsfile}" + msg = "Creating core for ${name}...\nGenerating ${jsfile}" println(msg) logOutFile.createNewFile() logOutFile.append(msg+"\n") @@ -1841,8 +1836,7 @@ def jalviewjsCallCore(FileCollection list, String prefixFile, String suffixFile, f -> if (f.exists()) { def t = f.text - t.replaceAll("Clazz\\.","Clazz_") - t.replaceAll("Class__","Clazz._") + t.replaceAll("Clazz\\.([^_])","Clazz_${1}") coreFile.append( t ) } else { msg = "...file '"+f.getPath()+"' does not exist, skipping" @@ -1922,7 +1916,7 @@ task jalviewjsBuildAllCores { classlistFiles += [ 'file': file("${jalviewDir}/${jalviewjs_classlist_jmol}"), 'name': "_jvjmol" ] classlistFiles += [ 'file': file("${jalviewDir}/${jalviewjs_classlist_jalview}"), 'name': jalviewjsJalviewCoreName ] - def classlists = [] + jalviewjsCoreClasslists = [] classlistFiles.each { hash -> @@ -1947,10 +1941,11 @@ task jalviewjsBuildAllCores { def jsfile = "${outputDir}/core${name}.js" def zjsfile = "${outputDir}/core${name}.z.js" - classlists += [ - 'jsfile': jsfile, - 'zjsfile': zjsfile, - 'list': list + jalviewjsCoreClasslists += [ + 'jsfile': jsfile, + 'zjsfile': zjsfile, + 'list': list, + 'name': name ] inputs.file(file) @@ -1960,74 +1955,96 @@ task jalviewjsBuildAllCores { } // _stevesoft core. add any cores without a classlist here (and the inputs and outputs) + def stevesoftClasslistName = "_stevesoft" def stevesoftClasslist = [ - 'jsfile': "${outputDir}/core_stevesoft.js", - 'zjsfile': "${outputDir}/core_stevesoft.z.js", - 'list': fileTree(dir: j2sDir, include: "com/stevesoft/pat/**/*.js") + 'jsfile': "${outputDir}/core${stevesoftClasslistName}.js", + 'zjsfile': "${outputDir}/core${stevesoftClasslistName}.z.js", + 'list': fileTree(dir: j2sDir, include: "com/stevesoft/pat/**/*.js"), + 'name': stevesoftClasslistName ] - classlists += stevesoftClasslist + jalviewjsCoreClasslists += stevesoftClasslist inputs.files(stevesoftClasslist['list']) outputs.file(stevesoftClasslist['jsfile']) outputs.file(stevesoftClasslist['zjsfile']) + // _all core + def allClasslistName = "_all" + def allClasslist = [ + 'jsfile': "${outputDir}/core${allClasslistName}.js", + 'zjsfile': "${outputDir}/core${allClasslistName}.z.js", + 'list': fileTree(dir: j2sDir, include: "**/*.js"), + 'name': allClasslistName + ] + jalviewjsCoreClasslists += allClasslist + inputs.files(allClasslist['list']) + outputs.file(allClasslist['jsfile']) + outputs.file(allClasslist['zjsfile']) + doFirst { def logOutFile = file("${jalviewDirAbsolutePath}/${jalviewjsBuildDir}/${jalviewjs_j2s_closure_stdout}") logOutFile.getParentFile().mkdirs() logOutFile.createNewFile() logOutFile.write(getDate("yyyy-MM-dd HH:mm:ss")+" jalviewjsBuildAllCores\n----\n") - classlists.each { - jalviewjsCallCore(it.list, prefixFile, suffixFile, it.jsfile, it.zjsfile, logOutFile, jalviewjs_j2s_to_console.equals("true")) + jalviewjsCoreClasslists.each { + jalviewjsCallCore(it.name, it.list, prefixFile, suffixFile, it.jsfile, it.zjsfile, logOutFile, jalviewjs_j2s_to_console.equals("true")) } } } -task jalviewjsPublishCoreTemplate(type: Sync) { - dependsOn jalviewjsBuildAllCores +def jalviewjsPublishCoreTemplate(String coreName, String templateName, File inputFile, String outputFile) { + copy { + from inputFile + into file(outputFile).getParentFile() + rename { filename -> + if (filename.equals(inputFile.getName())) { + return file(outputFile).getName() + } + return null + } + filter(ReplaceTokens, + beginToken: '_', + endToken: '_', + tokens: [ + 'MAIN': '"'+mainClass+'"', + 'CODE': "null", + 'NAME': jalviewjsJalviewTemplateName+" [core ${coreName}]", + 'COREKEY': jalviewjs_core_key, + 'CORENAME': coreName + ] + ) + } +} + - def inputFile = file("${jalviewDir}/${j2s_template_html}") +task jalviewjsPublishCoreTemplates { + dependsOn jalviewjsBuildAllCores + def inputFileName = "${jalviewDir}/${j2s_coretemplate_html}" + def inputFile = file(inputFileName) def outputDir = "${jalviewDir}/${jalviewjsTransferSiteCoreDir}" - from inputFile - into outputDir def outputFiles = [] - jalviewjsJalviewCoreHtmlFile = "${jalviewjsJalviewTemplateName}_${jalviewjsJalviewCoreName}.html" - rename { filename -> - outputFiles += "${outputDir}/${filename}" - if (filename.equals(inputFile.getName())) { - return jalviewjsJalviewCoreHtmlFile + jalviewjsCoreClasslists.each { cl -> + def outputFile = "${outputDir}/${jalviewjsJalviewTemplateName}_${cl.name}.html" + cl['outputfile'] = outputFile + outputFiles += outputFile + } + + doFirst { + jalviewjsCoreClasslists.each { cl -> + jalviewjsPublishCoreTemplate(cl.name, jalviewjsJalviewTemplateName, inputFile, cl.outputfile) } - return null - } - filter(ReplaceTokens, - beginToken: '_', - endToken: '_', - tokens: [ - 'MAIN': '"'+mainClass+'"', - 'CODE': "null", - 'NAME': jalviewjsJalviewTemplateName - ] - ) - filter(ReplaceTokens, - beginToken: '', - endToken: '', - tokens: [ - 'NONE': jalviewjsJalviewCoreName - ] - ) - preserve { - include "**" } - outputs.files outputFiles - inputs.files inputFile + inputs.file(inputFile) + outputs.files(outputFiles) } task jalviewjsSyncCore (type: Sync) { dependsOn jalviewjsBuildAllCores - dependsOn jalviewjsPublishCoreTemplate + dependsOn jalviewjsPublishCoreTemplates def inputFiles = fileTree(dir: "${jalviewDir}/${jalviewjsTransferSiteCoreDir}") def outputDir = "${jalviewDir}/${jalviewjsSiteDir}" @@ -2138,26 +2155,32 @@ task jalviewjsServer { def start = port def running = false def url - def urlcore while(port < start+1000 && !running) { try { def doc_root = new File("${jalviewDirAbsolutePath}/${jalviewjsSiteDir}") def jalviewjsServer = factory.start(doc_root, port) running = true url = jalviewjsServer.getResourceUrl(jalviewjs_server_resource) - urlcore = jalviewjsServer.getResourceUrl(jalviewjsJalviewCoreHtmlFile) println("SERVER STARTED with document root ${doc_root}.") println("Go to "+url+" . Run gradle --stop to stop (kills all gradle daemons).") println("For debug: "+url+"?j2sdebug") println("For core: "+urlcore) - file(htmlFile).text = """ + htmlText = """

JalviewJS Test. <${url}>

JalviewJS Test with debug. <${url}?j2sdebug<

-

${jalviewjsJalviewTemplateName} Core Test. <${urlcore}>

""" + jalviewjsCoreClasslists.each { cl -> + urlcore = jalviewjsServer.getResourceUrl(file(cl.outputfile).getName()) + htmlText += """ +

${jalviewjsJalviewTemplateName} [core ${cl.name}]. <${urlcore}>

+ """ + } + + file(htmlFile).text = htmlText } catch (Exception e) { + e.printStackTrace() port++; } } diff --git a/gradle.properties b/gradle.properties index e4ee8b9..aaf403d 100644 --- a/gradle.properties +++ b/gradle.properties @@ -173,8 +173,10 @@ jalviewjs_eclipse_build_arg = cleanBuild jalviewjs_server_port = 9001 jalviewjs_server_wait = 30 jalviewjs_server_resource = /jalview_bin_Jalview.html -jalviewjs_core_name = _jalview +jalviewjs_core_name = _all jalviewjs_name = JalviewJS +#jalviewjs_core_key = core +jalviewjs_core_key = preloadCore jalviewjs_default_core = all j2s.compiler.status = enable @@ -191,7 +193,7 @@ j2s.excluded.paths = test;testng;util #a semicolon-separated list of package (foo.) or class (foo.bar) replacements to be made j2s.class.replacements = org.apache.log4j.->jalview.javascript.log4j. j2s.template.html = utils/jalviewjs/template.html -j2s_template_html = utils/jalviewjs/template.html +j2s_coretemplate_html = utils/jalviewjs/coretemplate.html #output file name for logging methods declared - delete the file to regenerate a listing #j2s.prop.j2s.log.methods.declared=swingjs/methodsDeclared_csv #output file name for logging methods called - delete the file to regenerate a listing diff --git a/utils/jalviewjs/classlists/all.txt b/utils/jalviewjs/classlists/all.txt deleted file mode 100644 index 8838142..0000000 --- a/utils/jalviewjs/classlists/all.txt +++ /dev/null @@ -1,4754 +0,0 @@ -ext/edu/ucsf/rbvi/strucviz2/ChimUtils.js -ext/edu/ucsf/rbvi/strucviz2/ChimeraStructuralObject.js -ext/edu/ucsf/rbvi/strucviz2/ChimeraManager.js -ext/edu/ucsf/rbvi/strucviz2/ChimeraResidue.js -ext/edu/ucsf/rbvi/strucviz2/ChimeraTreeModel.js -ext/edu/ucsf/rbvi/strucviz2/port/ListenerThreads.js -ext/edu/ucsf/rbvi/strucviz2/ChimeraChain.js -ext/edu/ucsf/rbvi/strucviz2/StructureManager.js -ext/edu/ucsf/rbvi/strucviz2/ChimeraModel.js -ext/edu/ucsf/rbvi/strucviz2/StructureSettings.js -ext/vamsas/SeqSearchServiceSoapBindingStub.js -ext/vamsas/MuscleWSSoapBindingStub.js -ext/vamsas/SeqSearchI.js -ext/vamsas/ServiceHandles.js -ext/vamsas/MuscleWSService.js -ext/vamsas/JpredSoapBindingStub.js -ext/vamsas/IRegistryService.js -ext/vamsas/IRegistryServiceLocator.js -ext/vamsas/RegistryServiceSoapBindingStub.js -ext/vamsas/MuscleWS.js -ext/vamsas/JpredService.js -ext/vamsas/ServiceHandle.js -ext/vamsas/Jpred.js -ext/vamsas/JpredServiceLocator.js -ext/vamsas/SeqSearchServiceService.js -ext/vamsas/SeqSearchServiceLocator.js -ext/vamsas/IRegistry.js -ext/vamsas/MuscleWSServiceLocator.js -intervalstore/impl/BinarySearcher.js -intervalstore/impl/NCList.js -intervalstore/impl/NCNode.js -intervalstore/impl/IntervalStore.js -intervalstore/impl/Range.js -intervalstore/impl/NCListBuilder.js -intervalstore/api/IntervalStoreI.js -intervalstore/api/IntervalI.js -gnu/jpdf/PDFPrinterJob.js -gnu/jpdf/TestMenuBar.js -gnu/jpdf/PDFPage.js -gnu/jpdf/PDFObject.js -gnu/jpdf/TestPanel.js -gnu/jpdf/StringTooLongException.js 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-javax/swing/event/ChangeEvent.js -javax/swing/event/HyperlinkListener.js -javax/swing/event/TableColumnModelEvent.js -javax/swing/event/AncestorEvent.js -javax/swing/event/MouseInputAdapter.js -javax/swing/event/TreeExpansionEvent.js -javax/swing/event/MenuEvent.js -javax/swing/event/TreeSelectionEvent.js -javax/swing/event/InternalFrameEvent.js -javax/swing/event/HyperlinkEvent.js -javax/swing/event/MouseInputListener.js -javax/swing/event/ChangeListener.js -javax/swing/event/TableColumnModelListener.js -javax/swing/event/TreeWillExpandListener.js -javax/swing/event/MenuListener.js -javax/swing/event/PopupMenuListener.js -javax/swing/event/TreeModelEvent.js -javax/swing/event/CellEditorListener.js -javax/swing/event/TableModelListener.js -javax/swing/ActionPropertyChangeListener.js -javax/swing/CellRendererPane.js -javax/swing/UIDefaults.js -javax/swing/DefaultDesktopManager.js -javax/swing/RootPaneContainer.js -javax/swing/JMenu.js -javax/swing/LayoutStyle.js -javax/swing/AbstractListModel.js -javax/swing/ViewportLayout.js -javax/swing/FocusManager.js -javax/swing/DefaultCellEditor.js -javax/swing/JTable.js -javax/swing/ClientPropertyKey.js -javax/swing/text/GlyphPainter2.js -javax/swing/text/BoxView.js -javax/swing/text/StyleConstants.js -javax/swing/text/FlowView.js -javax/swing/text/MaskFormatter.js -javax/swing/text/View.js -javax/swing/text/DefaultFormatter.js -javax/swing/text/TableView.js -javax/swing/text/TabStop.js -javax/swing/text/WrappedPlainView.js -javax/swing/text/DefaultFormatterFactory.js -javax/swing/text/AttributeSet.js -javax/swing/text/StyledEditorKit.js -javax/swing/text/TabableView.js -javax/swing/text/TextAction.js -javax/swing/text/CompositeView.js -javax/swing/text/StateInvariantError.js -javax/swing/text/TabExpander.js -javax/swing/text/NavigationFilter.js -javax/swing/text/Utilities.js -javax/swing/text/ElementIterator.js -javax/swing/text/AbstractDocument.js -javax/swing/text/EditorKit.js -javax/swing/text/Keymap.js -javax/swing/text/LayeredHighlighter.js -javax/swing/text/SegmentCache.js -javax/swing/text/DefaultStyledDocument.js -javax/swing/text/DateFormatter.js -javax/swing/text/ParagraphView.js -javax/swing/text/Position.js -javax/swing/text/SimpleAttributeSet.js -javax/swing/text/ChangedCharSetException.js -javax/swing/text/Caret.js -javax/swing/text/Segment.js -javax/swing/text/DefaultCaret.js -javax/swing/text/Highlighter.js -javax/swing/text/PlainView.js -javax/swing/text/JTextComponent.js -javax/swing/text/AbstractWriter.js -javax/swing/text/BadLocationException.js -javax/swing/text/ViewFactory.js -javax/swing/text/Element.js -javax/swing/text/IconView.js -javax/swing/text/LabelView.js -javax/swing/text/PlainDocument.js -javax/swing/text/StyleContext.js -javax/swing/text/DefaultEditorKit.js -javax/swing/text/ComponentView.js -javax/swing/text/Document.js -javax/swing/text/Style.js -javax/swing/text/NumberFormatter.js -javax/swing/text/StringContent.js -javax/swing/text/DocumentFilter.js -javax/swing/text/InternationalFormatter.js -javax/swing/text/GapContent.js -javax/swing/text/GlyphView.js -javax/swing/text/MutableAttributeSet.js -javax/swing/text/GapVector.js -javax/swing/text/GlyphPainter1.js -javax/swing/text/DefaultHighlighter.js -javax/swing/text/TabSet.js -javax/swing/text/StyledDocument.js -javax/swing/OverlayLayout.js -javax/swing/border/TitledBorder.js -javax/swing/border/LineBorder.js -javax/swing/border/BevelBorder.js -javax/swing/border/EmptyBorder.js -javax/swing/border/AbstractBorder.js -javax/swing/border/CompoundBorder.js -javax/swing/border/Border.js -javax/swing/border/MatteBorder.js -javax/swing/border/SoftBevelBorder.js -javax/swing/border/EtchedBorder.js -javax/swing/JFileChooser.js -javax/swing/ActionMap.js -javax/swing/JLayeredPane.js -javax/swing/ScrollPaneConstants.js -javax/swing/Timer.js -javax/swing/JFrame.js -javax/swing/SwingConstants.js -javax/swing/JToolTip.js -javax/swing/JPopupMenu.js -javax/swing/JMenuItem.js -javax/swing/CellEditor.js -javax/swing/DefaultButtonModel.js -javax/swing/KeyboardManager.js -javax/sound/sampled/DataLine.js -javax/sound/sampled/SourceDataLine.js -javax/sound/sampled/AudioFileFormat.js -javax/sound/sampled/LineUnavailableException.js -javax/sound/sampled/LineListener.js -javax/sound/sampled/AudioInputStream.js -javax/sound/sampled/UnsupportedAudioFileException.js -javax/sound/sampled/Control.js -javax/sound/sampled/Line.js -javax/sound/sampled/AudioFormat.js -javax/sound/sampled/AudioSystem.js -javax/sound/sampled/LineEvent.js -javax/print/attribute/Attribute.js -javax/print/attribute/AttributeSet.js -javax/print/attribute/UnmodifiableSetException.js -javax/print/attribute/standard/PageRanges.js -javax/print/attribute/standard/Copies.js -javax/print/attribute/standard/RequestingUserName.js -javax/print/attribute/standard/JobName.js -javax/print/attribute/HashAttributeSet.js -javax/print/attribute/PrintRequestAttributeSet.js -javax/print/attribute/AttributeSetUtilities.js -javax/print/attribute/DocAttribute.js -javax/print/attribute/IntegerSyntax.js -javax/print/attribute/DocAttributeSet.js -javax/print/attribute/PrintJobAttributeSet.js -javax/print/attribute/HashDocAttributeSet.js -javax/print/attribute/PrintServiceAttributeSet.js -javax/print/attribute/HashPrintRequestAttributeSet.js -javax/print/attribute/PrintJobAttribute.js -javax/print/attribute/TextSyntax.js -javax/print/attribute/PrintRequestAttribute.js -javax/json/Json.js -javax/json/spi/JsonProvider.js -javax/json/JsonObject.js -javax/json/JsonException.js -javax/json/JsonValue.js -javax/json/JsonWriterFactory.js -javax/json/JsonStructure.js -javax/json/JsonArrayBuilder.js -javax/json/JsonString.js -javax/json/JsonNumber.js -javax/json/JsonObjectBuilder.js -javax/json/JsonReaderFactory.js -javax/json/JsonBuilderFactory.js -javax/json/JsonReader.js -javax/json/stream/JsonGeneratorFactory.js -javax/json/stream/JsonGenerationException.js 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-net/miginfocom/layout/ComponentWrapper.js -net/miginfocom/layout/LinkHandler.js -net/miginfocom/layout/BoundSize.js -net/miginfocom/layout/ConstraintParser.js -net/miginfocom/layout/AC.js -net/miginfocom/layout/LayoutCallback.js -net/miginfocom/layout/ContainerWrapper.js -net/miginfocom/layout/LC.js -net/miginfocom/layout/UnitConverter.js -net/miginfocom/layout/AnimSpec.js -net/miginfocom/layout/DimConstraint.js -net/miginfocom/layout/ResizeConstraint.js -net/miginfocom/layout/PlatformDefaults.js -net/miginfocom/layout/UnitValue.js -net/miginfocom/layout/LayoutUtil.js -net/miginfocom/layout/InCellGapProvider.js -net/miginfocom/layout/Grid.js -net/miginfocom/layout/CC.js diff --git a/utils/jalviewjs/coretemplate.html b/utils/jalviewjs/coretemplate.html new file mode 100644 index 0000000..7d802f2 --- /dev/null +++ b/utils/jalviewjs/coretemplate.html @@ -0,0 +1,32 @@ + + + +SwingJS test _NAME_ + + + + + +
+
+This is System.out. clear it
Add ?j2snocore to URL to see full class list; ?j2sdebug to use uncompressed j2s/core files
get _j2sClassList.txt +
+ +