From: cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Date: Sat, 6 Sep 2014 00:07:52 +0000 (+0000)
Subject: in progress
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=6a9ebfb6d8f770b1bd6af7a9b91abdec0db26782;p=jalview.git

in progress
---

diff --git a/forester/ruby/scripts/clean_fasta.rb b/forester/ruby/scripts/clean_fasta.rb
index 2530746..1a1705b 100644
--- a/forester/ruby/scripts/clean_fasta.rb
+++ b/forester/ruby/scripts/clean_fasta.rb
@@ -6,7 +6,7 @@ File.open(infile, 'r') do |f|
    while line = f.gets
        if line =~ /(>.+)~.+/
           line = $1
-       elsif line =~ /(>.+)|NAME=.+/
+       elsif line =~ /(>.+)\|NAME=.+/
            line = $1
        end
        puts line