From: amwaterhouse <Andrew Waterhouse>
Date: Mon, 13 Jun 2005 11:28:11 +0000 (+0000)
Subject: Get colourScheme with seqs and width
X-Git-Tag: Release_2_0~66
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=6bd69f196a5bdb8bdbc329166485d5da60b27389;p=jalview.git

Get colourScheme with seqs and width
---

diff --git a/src/jalview/schemes/ColourSchemeProperty.java b/src/jalview/schemes/ColourSchemeProperty.java
index 6e7a711..0d5ecc7 100755
--- a/src/jalview/schemes/ColourSchemeProperty.java
+++ b/src/jalview/schemes/ColourSchemeProperty.java
@@ -164,18 +164,23 @@ public class ColourSchemeProperty {
         return ret;
     }
 
-    public static ColourSchemeI getColour(jalview.datamodel.AlignmentI al,
+    public static ColourSchemeI getColour(jalview.datamodel.AlignmentI al, String name)
+    {
+     return getColour(al.getSequences(), al.getWidth(), name);
+    }
+
+    public static ColourSchemeI getColour(java.util.Vector seqs, int width,
         String name) {
-        return getColour(al, getColourIndexFromName(name));
+        return getColour(seqs, width, getColourIndexFromName(name));
     }
 
-    public static ColourSchemeI getColour(jalview.datamodel.AlignmentI al,
+    public static ColourSchemeI getColour(java.util.Vector seqs, int width,
         int index) {
         ColourSchemeI cs = null;
 
         switch (index) {
         case CLUSTAL:
-            cs = new ClustalxColourScheme(al.getSequences(), al.getWidth());
+            cs = new ClustalxColourScheme(seqs, width);
 
             break;