From: amwaterhouse <Andrew Waterhouse>
Date: Tue, 30 Jan 2007 18:23:35 +0000 (+0000)
Subject: Check valid residues in ss
X-Git-Tag: Release_2_3~411
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=6d2ac2cbcb07793b6012462179791b3f6bf95414;p=jalview.git

Check valid residues in ss
---

diff --git a/src/jalview/datamodel/AlignmentAnnotation.java b/src/jalview/datamodel/AlignmentAnnotation.java
index 6dcf23b..66ea733 100755
--- a/src/jalview/datamodel/AlignmentAnnotation.java
+++ b/src/jalview/datamodel/AlignmentAnnotation.java
@@ -129,10 +129,11 @@ public class AlignmentAnnotation
         if (annotations[i].displayCharacter.length()==1
             && !annotations[i].displayCharacter.equals("H")
             && !annotations[i].displayCharacter.equals("E")
-            && !annotations[i].displayCharacter.equals("-"))
+            && !annotations[i].displayCharacter.equals("-")
+            && !annotations[i].displayCharacter.equals("."))
         {
           if(jalview.schemes.ResidueProperties.aaIndex
-             [annotations[i].displayCharacter.charAt(0)]>0)
+             [annotations[i].displayCharacter.charAt(0)]<23)
           {
             nonSSLabel = true;
           }