From: cmzmasek@gmail.com Date: Wed, 21 Mar 2012 04:27:48 +0000 (+0000) Subject: in progress X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=6ec52a89aaae435c2289caeee5902b5687df59f3;p=jalview.git in progress --- diff --git a/forester/ruby/scripts/preprocess.rb b/forester/ruby/scripts/preprocess.rb index 8829eb6..455b97e 100644 --- a/forester/ruby/scripts/preprocess.rb +++ b/forester/ruby/scripts/preprocess.rb @@ -10,7 +10,7 @@ input = ARGV[ 0 ] pfam = ARGV[ 1 ] -system( "hmmscan --nobias --domtblout " + input + "_hmmscan_260_10 -E 10 " + pfam + " + input + ".ni.fasta" ) +system( "hmmscan --nobias --domtblout " + input + "_hmmscan_260_10 -E 10 " + pfam + " " + input + ".ni.fasta" ) system( "hsp " + input + "_hmmscan_260_10 " + input + "_hmmscan_260_10_domain_table" )