From: cmzmasek@gmail.com Date: Sat, 26 May 2012 23:17:45 +0000 (+0000) Subject: in progress X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=7019346e7e8cecf22a06ffb59ea86daf0d28189d;p=jalview.git in progress --- diff --git a/forester/java/src/org/forester/io/parsers/GeneralMsaParser.java b/forester/java/src/org/forester/io/parsers/GeneralMsaParser.java index 6e79477..bf6577c 100644 --- a/forester/java/src/org/forester/io/parsers/GeneralMsaParser.java +++ b/forester/java/src/org/forester/io/parsers/GeneralMsaParser.java @@ -48,7 +48,7 @@ public final class GeneralMsaParser { private static final Pattern NAME_SEQ_PATTERN = Pattern.compile( "(\\S+)\\s+(\\S+)\\s*" ); private static final Pattern INDENTED_SEQ_PATTERN = Pattern.compile( "\\s+(\\S+)\\s*" ); private static final Pattern NON_INDENTED_SEQ_PATTERN = Pattern.compile( "(\\S+).*" ); - private static final Pattern PROBCONS_REGEX = Pattern.compile( "^CLUSTAL\\s" ); + private static final Pattern PROBCONS_REGEX = Pattern.compile( "^CLUSTAL" ); private static final Pattern MUSCLE_REGEX = Pattern.compile( "^MUSCLE\\s\\(" ); private static final Pattern CLUSTAL_REGEX = Pattern.compile( "^PROBCONS\\s" ); private static final Pattern ANYTHING_REGEX = Pattern.compile( "[\\d\\s]+" );