From: Jim Procter <j.procter@dundee.ac.uk>
Date: Mon, 17 Oct 2022 11:49:02 +0000 (+0100)
Subject: JAL-3855 bump AF version to 3 - keep contact renderer happy by filling out maxcols... 
X-Git-Tag: Release_2_11_4_0~542
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=71b8b157747abb849fb50316450a22d4559873da;p=jalview.git

JAL-3855 bump AF version to 3 - keep contact renderer happy by filling out maxcols and maxrows attribute in PAE
---

diff --git a/src/jalview/ws/datamodel/alphafold/PAEContactMatrix.java b/src/jalview/ws/datamodel/alphafold/PAEContactMatrix.java
index 8b6771e..3a8e26a 100644
--- a/src/jalview/ws/datamodel/alphafold/PAEContactMatrix.java
+++ b/src/jalview/ws/datamodel/alphafold/PAEContactMatrix.java
@@ -75,6 +75,8 @@ public class PAEContactMatrix implements ContactMatrixI
       row++;
       col = 0;
     }
+    maxcol = length;
+    maxrow = length;
   }
 
   /**
diff --git a/src/jalview/ws/dbsources/EBIAlfaFold.java b/src/jalview/ws/dbsources/EBIAlfaFold.java
index ba78199..f98ae6d 100644
--- a/src/jalview/ws/dbsources/EBIAlfaFold.java
+++ b/src/jalview/ws/dbsources/EBIAlfaFold.java
@@ -61,7 +61,7 @@ public class EBIAlfaFold extends EbiFileRetrievedProxy
 
   private static final int PDB_ID_LENGTH = 4;
 
-  private static String AF_VERSION = "2";
+  private static String AF_VERSION = "3";
 
   public EBIAlfaFold()
   {