From: cmzmasek@gmail.com Date: Sat, 16 Aug 2014 00:02:41 +0000 (+0000) Subject: in progress X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=71fdf8c5a582387b20a070f568c97db64b9800c6;p=jalview.git in progress --- diff --git a/forester/aptx/aptx_configuration_files/_aptx_configuration_file b/forester/aptx/aptx_configuration_files/_aptx_configuration_file index 9fc8c84..a384a57 100644 --- a/forester/aptx/aptx_configuration_files/_aptx_configuration_file +++ b/forester/aptx/aptx_configuration_files/_aptx_configuration_file @@ -276,7 +276,7 @@ display_color: background 0x000000 display_color: background_gradient_bottom 0x0000FF display_color: sequence 0xE6E6E6 display_color: taxonomy 0xB4B4B4 -display_color: confidence 0x38B0FF +display_color: confidence 0xB4B4B4 display_color: branch_length 0x8C8C8C display_color: branch 0xFFFFFF display_color: node_box 0xFFFFFF @@ -287,7 +287,8 @@ display_color: matching_a_and_b 0xFFFF00 display_color: duplication 0xFF0000 display_color: speciation 0x00FF00 display_color: duplication_or_specation 0xFFFF00 -display_color: domains 0x7B68EE +display_color: domain_label 0xE6E6E6 +display_color: domain_base 0x646464 display_color: binary_domain_combinations 0x4169FF display_color: annotation 0xADFF2F display_color: overview 0x828282 @@ -319,13 +320,6 @@ vector_data_width: 120 vector_data_height: 12 -# Domain Structure Display Colors -# ------------------------------- -domain_structure_base_color: 0x202020 -domain_structure_font_color: 0x909090 - - - # Settings Specific for Archaeopteryx Applets (E and A) # ----------------------------------------------------- # To automatically midpoint reroot trees upon loading: 'midpoint_reroot: yes' diff --git a/forester/aptx/aptx_configuration_files/_aptx_configuration_file_1 b/forester/aptx/aptx_configuration_files/_aptx_configuration_file_1 index 8b41305..a5a504e 100644 --- a/forester/aptx/aptx_configuration_files/_aptx_configuration_file_1 +++ b/forester/aptx/aptx_configuration_files/_aptx_configuration_file_1 @@ -244,9 +244,9 @@ default_click_to: display_node_data display_color: background 0x000000 display_color: background_gradient_bottom 0x0000FF -display_color: sequence 0xDCDCDC +display_color: sequence 0xE6E6E6 display_color: taxonomy 0xB4B4B4 -display_color: confidence 0x38B0DE +display_color: confidence 0xB4B4B4 display_color: branch_length 0x8C8C8C display_color: branch 0xFFFFFF display_color: node_box 0xFFFFFF @@ -257,7 +257,8 @@ display_color: matching_a_and_b 0xFFFF00 display_color: duplication 0xFF0000 display_color: speciation 0x00FF00 display_color: duplication_or_specation 0xFFFF00 -display_color: domains 0x7B68EE +display_color: domain_label 0xE6E6E6 +display_color: domain_base 0x646464 display_color: binary_domain_combinations 0x4169FF display_color: annotation 0xADFF2F display_color: overview 0x828282