From: cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Date: Tue, 1 Mar 2011 19:21:31 +0000 (+0000)
Subject: Edited wiki page PhyloBioRuby through web user interface.
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=7259c417c2076e5bbe5d9952cf8397eed6c7e7ce;p=jalview.git

Edited wiki page PhyloBioRuby through web user interface.
---

diff --git a/wiki/PhyloBioRuby.wiki b/wiki/PhyloBioRuby.wiki
index b9d4157..ef6955a 100644
--- a/wiki/PhyloBioRuby.wiki
+++ b/wiki/PhyloBioRuby.wiki
@@ -80,6 +80,26 @@ f.write(align.output(:phylipnon))
 }}}
 
 
+== Formats for individual sequences ==
+
+_... to be done_
+
+!BioRuby can format molecular sequences in a variety of formats.
+Individual sequences can be formatted to (e.g.) Genbank format as shown in the following examples.
+
+For Sequence objects:
+{{{
+seq.to_seq.output(:genbank)
+}}}
+
+For !Bio::FlatFile entries:
+{{{
+entry.to_biosequence.output(:genbank)
+}}}
+
+Constants for available formats are:
+  * Genbank :genbank
+
 
 == Calculating Multiple Sequence Alignments ==