From: Ben Soares <b.soares@dundee.ac.uk>
Date: Wed, 20 Sep 2023 10:23:05 +0000 (+0100)
Subject: JAL-629 Add link and example for BioJS image output
X-Git-Tag: Release_2_11_4_0~174^2~9
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=730325fdf22404c6f251adae0da5ec6386c3962e;p=jalview.git

JAL-629 Add link and example for BioJS image output
---

diff --git a/help/help/html/features/clarguments-basic.html b/help/help/html/features/clarguments-basic.html
index 44c3459..f9fef90 100644
--- a/help/help/html/features/clarguments-basic.html
+++ b/help/help/html/features/clarguments-basic.html
@@ -556,7 +556,7 @@
   <h3><a name="vector"></a>Vector image export (<code>svg</code>, <code>eps</code>, <code>html</code>, <code>biojs</code>)</h3>
 
   <p>
-  Jalview can export an alignment in Encapsulated PostScript (<code>eps</code>), Scalable Vector Graphics (<code>svg</code>), HTML (<code>html</code>) or BioJSON -- another HTML format (<code>biojs</code>), by using, e.g.
+  Jalview can export an alignment in Encapsulated PostScript (<code>eps</code>), Scalable Vector Graphics (<code>svg</code>), HTML (<code>html</code>) or <a href="biojsmsa.html">BioJSON</a> -- another HTML format with an interactive MSA viewer (<code>biojs</code>), by using, e.g.
   <pre>
   jalview --open examples/uniref50.fa --colour gecos-flower --image printable.eps
   </pre>
@@ -565,6 +565,7 @@
   jalview --open examples/uniref50.fa --colour gecos-flower --image printable.eps
   jalview --open examples/uniref50.fa --colour gecos-flower --image printable.postscript --type eps
   jalview --open examples/uniref50.fa --colour gecos-flower --image [type=eps]printable.postscript
+  jalview --open examples/uniref50.fa --colour gecos-flower --image [type=biojs]printable.html
   </pre>
   </p>