From: Jim Procter <jprocter@issues.jalview.org>
Date: Mon, 27 Nov 2017 22:07:07 +0000 (+0000)
Subject: JAL-2859 failing test demonstrating sequences with pdb without a local file map all... 
X-Git-Tag: Release_2_10_3b1~5^2~2^2~1
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=739fba2ea08bff46a621f1fec5f3564bd6af40de;p=jalview.git

JAL-2859 failing test demonstrating sequences with pdb without a local file map all get mapped together
---

diff --git a/test/jalview/gui/StructureViewerTest.java b/test/jalview/gui/StructureViewerTest.java
index 4d5b114..86342d2 100644
--- a/test/jalview/gui/StructureViewerTest.java
+++ b/test/jalview/gui/StructureViewerTest.java
@@ -39,8 +39,10 @@ public class StructureViewerTest
     PDBEntry pdbe4 = new PDBEntry("1GAQ", "A", Type.PDB, null);
     PDBEntry pdbe5 = new PDBEntry("3A6S", "B", Type.PDB, "path2");
     PDBEntry pdbe6 = new PDBEntry("1GAQ", "B", Type.PDB, null);
+    PDBEntry pdbe7 = new PDBEntry("1FOO", "Q", Type.PDB, null);
+
     PDBEntry[] pdbs = new PDBEntry[] { pdbe1, pdbe2, pdbe3, pdbe4, pdbe5,
-        pdbe6 };
+        pdbe6, pdbe7 };
 
     /*
      * seq1 ... seq6 associated with pdbe1 ... pdbe6
@@ -61,6 +63,7 @@ public class StructureViewerTest
     assertTrue(uniques.containsKey(pdbe4));
     assertFalse(uniques.containsKey(pdbe5));
     assertFalse(uniques.containsKey(pdbe6));
+    assertTrue(uniques.containsKey(pdbe7));
 
     // 1A70 associates with seq1 and seq3
     SequenceI[] ss = uniques.get(pdbe1);
@@ -79,5 +82,10 @@ public class StructureViewerTest
     assertEquals(ss.length, 2);
     assertSame(seqs[3], ss[0]);
     assertSame(seqs[5], ss[1]);
+
+    // 1FOO has seq7
+    ss = uniques.get(pdbe7);
+    assertEquals(ss.length, 1);
+    assertSame(seqs[6], ss[0]);
   }
 }