From: Jim Procter <jprocter@issues.jalview.org>
Date: Mon, 19 Oct 2020 17:07:29 +0000 (+0100)
Subject: JAL-3765 simple test that findAll finds all matches for a pattern when it is present... 
X-Git-Tag: Release_2_11_1_3~11^2~2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=7428d315297907b3bb52ddb099a348acffb87636;p=jalview.git

JAL-3765 simple test that findAll finds all matches for a pattern when it is present multiple times in a sequence
---

diff --git a/test/jalview/analysis/FinderTest.java b/test/jalview/analysis/FinderTest.java
index 95e6c0d..764c56f 100644
--- a/test/jalview/analysis/FinderTest.java
+++ b/test/jalview/analysis/FinderTest.java
@@ -82,6 +82,16 @@ public class FinderTest
             DataSourceType.PASTE);
     av = af.getViewport();
     al = av.getAlignment();
+    
+    // JAL-3765 bug test data
+    String longSeqData = 
+            ">O80429_MAIZE/2-140 Ferredoxin\n" + 
+            "AAT---------ALSMSILR---APPPCFSSPLRLRV--AVAKPLA-APMRRQLLRAQATYNVKLITPEGEV\n" + 
+            "ELQVPDDVYILDFAEEEGIDLPFSCRAGSCSSCAGKVVSGSVDQSDQSFLNDNQVADGWVLTCAAYPTSDVV\n" + 
+            "IETHKEDDLL--\n" ;
+    af_oneseq=new FileLoader().LoadFileWaitTillLoaded(longSeqData, DataSourceType.PASTE);
+    av_oneseq = af_oneseq.getViewport();
+    al_oneseq = av_oneseq.getAlignment();
   }
 
   @AfterMethod(alwaysRun = true)