From: jprocter <Jim Procter>
Date: Tue, 20 Jul 2010 09:07:22 +0000 (+0000)
Subject: less ambiguous feature style description
X-Git-Tag: Release_2_6~143
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=750f7c545af4980a6eb81aca584be4e6e9669866;p=jalview.git

less ambiguous feature style description
---

diff --git a/help/html/features/featuresettings.html b/help/html/features/featuresettings.html
index 390ad78..3c8b496 100755
--- a/help/html/features/featuresettings.html
+++ b/help/html/features/featuresettings.html
@@ -31,17 +31,19 @@ Sequence Feature Settings for the Jalview Application</img></center>
 <p>The top section of the dialog box lists all the sequence feature
 groups, along with a tickbox for each that controls whether its features
 are displayed. The table in the middle lists all the features in the
-currently selected groups, along with their display colour and whether
+currently selected groups, along with their display style and whether
 they are currently being displayed (only the ticked features and groups
-are displayed). <strong><em>You can change the colour used
-for a feature in the associated alignment by clicking on its colour box.</em></strong></p>
+are displayed). <strong><em>You can change the colour or
+shading style used for a feature in the associated alignment by clicking
+on its colour box.</em></strong></p>
 <p><strong><em>Feature settings pop-up menu</em></strong><br>
 <strong>Right-click</strong> on a feature to open a pop-up menu that
 allows you to sort the alignment or current selection using that feature
-type (see below), or create a <a href="featureschemes.html">feature
-colourscheme</a> based on either the scores associated with that feature or
-from the feature's description (e.g. to distinguish different names
-associated with a DOMAIN feature).</p>
+type (see below), or toggle the type of colouring used for the feature.
+Features may be highlighted with either a single colour or a <a
+	href="featureschemes.html">feature colourscheme</a> based on either the
+scores associated with that feature or from the feature's description
+(e.g. to distinguish different names associated with a DOMAIN feature).</p>
 <p><strong>Ordering alignment by features</strong><br>
 The 'Seq Sort by Score' and 'Seq Sort by Density' buttons will sort the
 alignment based on the average score or total number of currently active