From: cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Date: Tue, 14 Jan 2014 01:12:50 +0000 (+0000)
Subject: inprogress
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=7592141fb51c2de287c6150536dd1137bb852e3c;p=jalview.git

inprogress
---

diff --git a/forester/java/src/org/forester/application/annotator.java b/forester/java/src/org/forester/application/annotator.java
index bfd8f15..1614412 100644
--- a/forester/java/src/org/forester/application/annotator.java
+++ b/forester/java/src/org/forester/application/annotator.java
@@ -103,15 +103,15 @@ public final class annotator {
                 catch ( final IOException e ) {
                     ForesterUtil.fatalError( PRG_NAME, e.getMessage() );
                 }
-                try {
-                    inferTaxonomyFromDescendents( phy );
-                }
-                catch ( final IOException e ) {
-                    ForesterUtil.fatalError( PRG_NAME, e.getMessage() );
-                }
-                catch ( final AncestralTaxonomyInferenceException e ) {
-                    ForesterUtil.fatalError( PRG_NAME, e.getMessage() );
-                }
+                //                try {
+                //                    inferTaxonomyFromDescendents( phy );
+                //                }
+                //                catch ( final IOException e ) {
+                //                    ForesterUtil.fatalError( PRG_NAME, e.getMessage() );
+                //                }
+                //                catch ( final AncestralTaxonomyInferenceException e ) {
+                //                    ForesterUtil.fatalError( PRG_NAME, e.getMessage() );
+                //                }
                 try {
                     final PhylogenyWriter w = new PhylogenyWriter();
                     w.toPhyloXML( phy, 0, outfile );