From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Tue, 3 Oct 2017 10:21:11 +0000 (+0100)
Subject: JAL-2738 code formatting
X-Git-Tag: Release_2_11_0~214
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=75b4e1bacc2df850c7f1ae022d92c7d39e803357;p=jalview.git

JAL-2738 code formatting
---

diff --git a/src/jalview/io/vcf/VCFLoader.java b/src/jalview/io/vcf/VCFLoader.java
index 8dab1d6..9099fcd 100644
--- a/src/jalview/io/vcf/VCFLoader.java
+++ b/src/jalview/io/vcf/VCFLoader.java
@@ -668,8 +668,7 @@ public class VCFLoader
    * @param sf
    * @param altAlelleIndex
    */
-  protected void addAlleleProperties(VariantContext variant,
- SequenceI seq,
+  protected void addAlleleProperties(VariantContext variant, SequenceI seq,
           SequenceFeature sf, final int altAlelleIndex)
   {
     Map<String, Object> atts = variant.getAttributes();
@@ -753,8 +752,7 @@ public class VCFLoader
    *          (1=first alternative allele...)
    */
   protected void addConsequences(Object value, SequenceI seq,
-          SequenceFeature sf,
-          int altAlelleIndex)
+          SequenceFeature sf, int altAlelleIndex)
   {
     if (!(value instanceof ArrayList<?>))
     {