From: Jim Procter <jprocter@dundee.ac.uk>
Date: Thu, 27 Jun 2024 16:28:18 +0000 (+0100)
Subject: JAL-4411 catch cases when 'ssStructFilePathNameInPDB' is null - this happens when... 
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=76e5a83cce4fd1dd310300600b5d01f5b60e3794;p=jalview.git

JAL-4411 catch cases when 'ssStructFilePathNameInPDB' is null - this happens when files are imported from Jalview project - which may mean provider is not conserved in round trip to project
---

diff --git a/src/jalview/structure/StructureSelectionManager.java b/src/jalview/structure/StructureSelectionManager.java
index 36c8764..95f93ea 100644
--- a/src/jalview/structure/StructureSelectionManager.java
+++ b/src/jalview/structure/StructureSelectionManager.java
@@ -711,7 +711,7 @@ public class StructureSelectionManager
       //Match the PDB entry using file path in the pdb data model and get the provider
       Vector<PDBEntry> pdbEntries = seq.getDatasetSequence().getAllPDBEntries();
       for(PDBEntry pdbEntry : pdbEntries) {        
-        if(ssStructFilePathNameInPDB.startsWith(pdbEntry.getFile())) {
+        if(ssStructFilePathNameInPDB!=null && pdbEntry.getFile()!=null && ssStructFilePathNameInPDB.startsWith(pdbEntry.getFile())) {
           provider = pdbEntry.getProvider();
           break;
         }