From: jprocter <Jim Procter>
Date: Tue, 4 Nov 2008 13:29:51 +0000 (+0000)
Subject: implemented embl validation properly
X-Git-Tag: Release_2_5~429
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=77089d22860b84145b18f084efe95f6efa484674;p=jalview.git

implemented embl validation properly
---

diff --git a/src/jalview/ws/dbsources/EmblCdsSouce.java b/src/jalview/ws/dbsources/EmblCdsSouce.java
index 1ac5c76..b3242ad 100644
--- a/src/jalview/ws/dbsources/EmblCdsSouce.java
+++ b/src/jalview/ws/dbsources/EmblCdsSouce.java
@@ -68,8 +68,9 @@ public class EmblCdsSouce extends EmblXmlSource implements DbSourceProxy
 
   public boolean isValidReference(String accession)
   {
-    // TODO Auto-generated method stub
-    return true;
+    // most embl CDS refs look like ..
+    // TODO: improve EMBLCDS regex
+    return (accession==null || accession.length()<2) ? false : new com.stevesoft.pat.Regex("^[A-Z]+[0-9]+").search(accession);
   }
 
   /**