From: Jim Procter <jprocter@issues.jalview.org>
Date: Wed, 7 Sep 2016 11:26:32 +0000 (+0100)
Subject: JAL-282 TODO - Sequence name from PDB had redundant info
X-Git-Tag: Release_2_10_0~47^2~4^2~3
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=779c04818839bd05d52a4137218ac9dbe5b4835d;p=jalview.git

JAL-282 TODO - Sequence name from PDB had redundant info
---

diff --git a/src/jalview/ws/dbsources/Pdb.java b/src/jalview/ws/dbsources/Pdb.java
index 61c5c04..04c23a2 100644
--- a/src/jalview/ws/dbsources/Pdb.java
+++ b/src/jalview/ws/dbsources/Pdb.java
@@ -173,6 +173,8 @@ public class Pdb extends EbiFileRetrievedProxy
                           || chid.trim().equals(chain.trim()) || (chain
                           .trim().length() == 0 && chid.equals("_")))))
           {
+            // FIXME seems to result in 'PDB|1QIP|1qip|A' - 1QIP is redundant.
+            // TODO: suggest simplify naming to 1qip|A as default name defined
             pdbcs.setName(jalview.datamodel.DBRefSource.PDB + "|" + id
                     + "|" + pdbcs.getName());
             // Might need to add more metadata to the PDBEntry object