From: Jim Procter <jprocter@compbio.dundee.ac.uk>
Date: Wed, 22 May 2013 16:45:29 +0000 (+0100)
Subject: JAL-1297 JAL-1295 JAL-1294 sensible toString for benefit of annotation IO test
X-Git-Tag: Jalview_2_9~249^2~18
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=788b7b7980d3de31579a9081bd0b3043b08d7a26;p=jalview.git

JAL-1297 JAL-1295 JAL-1294 sensible toString for benefit of annotation IO test
---

diff --git a/src/jalview/datamodel/Annotation.java b/src/jalview/datamodel/Annotation.java
index 73611bd..b7a83a5 100755
--- a/src/jalview/datamodel/Annotation.java
+++ b/src/jalview/datamodel/Annotation.java
@@ -117,4 +117,57 @@ public class Annotation
   {
     this(null, null, ' ', val);
   }
+
+  @Override
+  public String toString()
+  {
+    StringBuffer sb = new StringBuffer();
+    if (displayCharacter != null)
+    {
+      sb.append("\'");
+      sb.append(displayCharacter);
+      sb.append("\'");
+    }
+    {
+      sb.append(",");
+    }
+    if (secondaryStructure != 0
+            && !("" + displayCharacter).equals("" + secondaryStructure))
+    {
+      sb.append("\'");
+      sb.append(secondaryStructure);
+      sb.append("\'");
+    }
+    {
+      sb.append(",");
+    }
+    if (description != null && description.length() > 0)
+    {
+      sb.append("\"");
+      sb.append(description);
+      sb.append("\"");
+    }
+    {
+      sb.append(",");
+    }
+    if (value != Float.NaN)
+    {
+      sb.append(value);
+    }
+    if (colour != null)
+    {
+      if (sb.length() > 0)
+      {
+        sb.append(",");
+      }
+      sb.append("[");
+      sb.append(colour.getRed());
+      sb.append(",");
+      sb.append(colour.getGreen());
+      sb.append(",");
+      sb.append(colour.getBlue());
+      sb.append("]");
+    }
+    return sb.toString();
+  }
 }