From: Jim Procter <jprocter@issues.jalview.org>
Date: Tue, 18 Feb 2020 17:40:12 +0000 (+0000)
Subject: JAL-3529 assert Uniprot refs must be provided as primary ‘AC’ ref
X-Git-Tag: Develop-2_11_2_0-d20201215~35^2~4
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=79b76c7dbb5322cb7b188035fb2fdf676ee974fa;p=jalview.git

JAL-3529 assert Uniprot refs must be provided as primary ‘AC’ ref
---

diff --git a/test/jalview/io/StockholmFileTest.java b/test/jalview/io/StockholmFileTest.java
index 9004cdf..a16aa07 100644
--- a/test/jalview/io/StockholmFileTest.java
+++ b/test/jalview/io/StockholmFileTest.java
@@ -114,7 +114,7 @@ public class StockholmFileTest
     String toStockholm = af.formatSequences(FileFormat.Stockholm,
             new Alignment(new SequenceI[]
             { sq }), false);
-    assertTrue(toStockholm.indexOf("P00224") > -1,
+    assertTrue(toStockholm.matches("AC\\s+P00224"),
             "Couldn't locate UNIPROT Accession in generated Stockholm file.");
     AlignmentI fromStockholm = af.readFile(toStockholm,
             DataSourceType.PASTE, FileFormat.Stockholm);