From: Charles Ofoegbu <tcnofoegbu@dundee.ac.uk>
Date: Tue, 20 Jan 2015 12:17:37 +0000 (+0000)
Subject: Merge branch 'features/JAL-1553_improvement-select-column-by-annotation-row-query... 
X-Git-Tag: Jalview_2_9~116
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=7a6a8dc59217f4fae6d2ce36b3529aba76f5a002;hp=c03d2649512cdc491a46dda1d1370273241b5253;p=jalview.git

Merge branch 'features/JAL-1553_improvement-select-column-by-annotation-row-query-interface' into develop
---

diff --git a/src/jalview/io/AppletFormatAdapter.java b/src/jalview/io/AppletFormatAdapter.java
index 505f609..89adead 100755
--- a/src/jalview/io/AppletFormatAdapter.java
+++ b/src/jalview/io/AppletFormatAdapter.java
@@ -64,16 +64,16 @@ public class AppletFormatAdapter
    * that are writable by the application.
    */
   public static final String[] WRITABLE_EXTENSIONS = new String[]
-          { "fa, fasta, mfa, fastq", "aln", "pfam", "msf", "pir", "blc", "amsa",
-    "jvp", "sto,stk", "jar", PhylipFile.FILE_EXT };
+  { "fa, fasta, mfa, fastq", "aln", "pfam", "msf", "pir", "blc", "amsa",
+      "sto,stk", PhylipFile.FILE_EXT, "jvp" };
 
   /**
    * List of writable formats by the application. Order must correspond with the
    * WRITABLE_EXTENSIONS list of formats.
    */
   public static final String[] WRITABLE_FNAMES = new String[]
-          { "Fasta", "Clustal", "PFAM", "MSF", "PIR", "BLC", "AMSA", "Jalview",
-    "STH", "Jalview", PhylipFile.FILE_DESC };
+  { "Fasta", "Clustal", "PFAM", "MSF", "PIR", "BLC", "AMSA", "STH",
+      PhylipFile.FILE_DESC, "Jalview" };
 
   /**
    * List of readable format file extensions by application in order