From: Fábio Madeira Date: Mon, 10 Apr 2017 17:02:18 +0000 (+0100) Subject: JWS-116 Moved the boostrap’ed manual pages to a temporary dir. The documentation... X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=7b3264999606fb9312bfa4e6a4a7190eae5fbee0;p=jabaws.git JWS-116 Moved the boostrap’ed manual pages to a temporary dir. The documentation pages are now generated with Sphinx. --- diff --git a/website/man_about.jsp b/website/man_pages_old/man_about.jsp similarity index 99% rename from website/man_about.jsp rename to website/man_pages_old/man_about.jsp index 62edca5..8f246cc 100644 --- a/website/man_about.jsp +++ b/website/man_pages_old/man_about.jsp @@ -7,7 +7,7 @@ <%@ taglib uri="http://displaytag.sf.net" prefix="dt" %> - + Documentation @@ -296,11 +296,11 @@ is the Java tool for creating web service bindings. In addition, this offers some additional methods that simplify working with JABAWS. For more information please refer to the - data model javadoc. + data model javadoc.

- \ No newline at end of file + \ No newline at end of file diff --git a/website/man_client.jsp b/website/man_pages_old/man_client.jsp similarity index 98% rename from website/man_client.jsp rename to website/man_pages_old/man_client.jsp index 69a71e8..ff334c9 100644 --- a/website/man_client.jsp +++ b/website/man_pages_old/man_client.jsp @@ -7,7 +7,7 @@ <%@ taglib uri="http://displaytag.sf.net" prefix="dt" %> - + Documentation @@ -152,4 +152,4 @@ MTADGPRELLQLRAAV - \ No newline at end of file + \ No newline at end of file diff --git a/website/man_configuration.jsp b/website/man_pages_old/man_configuration.jsp similarity index 99% rename from website/man_configuration.jsp rename to website/man_pages_old/man_configuration.jsp index 9d8680f..e3c2abd 100644 --- a/website/man_configuration.jsp +++ b/website/man_pages_old/man_configuration.jsp @@ -7,7 +7,7 @@ <%@ taglib uri="http://displaytag.sf.net" prefix="dt" %> - + Documentation @@ -657,4 +657,4 @@ mafft.cluster.settings=-q bigmem.q -l h_cpu=24:00:00 -l h_vmem=6000M -l ram=6000 - \ No newline at end of file + \ No newline at end of file diff --git a/website/man_dev.jsp b/website/man_pages_old/man_dev.jsp similarity index 99% rename from website/man_dev.jsp rename to website/man_pages_old/man_dev.jsp index 217b850..58c84d5 100644 --- a/website/man_dev.jsp +++ b/website/man_pages_old/man_dev.jsp @@ -7,7 +7,7 @@ <%@ taglib uri="http://displaytag.sf.net" prefix="dt" %> - + Documentation @@ -527,7 +527,7 @@ public static void main(String[] args) throws UnsupportedRuntimeException, }

For a more detailed description of all available types and their functions please - refer to the Data Model JavaDoc. + refer to the Data Model JavaDoc.

Back to top @@ -558,4 +558,4 @@ public static void main(String[] args) throws UnsupportedRuntimeException, - \ No newline at end of file + \ No newline at end of file diff --git a/website/man_docs.jsp b/website/man_pages_old/man_docs.jsp similarity index 99% rename from website/man_docs.jsp rename to website/man_pages_old/man_docs.jsp index a571f5e..93a879e 100644 --- a/website/man_docs.jsp +++ b/website/man_pages_old/man_docs.jsp @@ -7,7 +7,7 @@ <%@ taglib uri="http://displaytag.sf.net" prefix="dt" %> - + Documentation @@ -157,4 +157,4 @@ - \ No newline at end of file + \ No newline at end of file diff --git a/website/man_server_dev.jsp b/website/man_pages_old/man_server_dev.jsp similarity index 98% rename from website/man_server_dev.jsp rename to website/man_pages_old/man_server_dev.jsp index eea2e0c..9d7b776 100644 --- a/website/man_server_dev.jsp +++ b/website/man_pages_old/man_server_dev.jsp @@ -7,7 +7,7 @@ <%@ taglib uri="http://displaytag.sf.net" prefix="dt" %> - + Documentation @@ -123,8 +123,8 @@

The code structure

- JABAWS Code Structure + JABAWS Code Structure
  • datamodel contains the JABAWS datamodel
  • engine contains the JABAWS engine - the code that abstract the execution environment and executes native binaries
    • @@ -428,4 +428,4 @@
- \ No newline at end of file + \ No newline at end of file diff --git a/website/man_servervm.jsp b/website/man_pages_old/man_servervm.jsp similarity index 97% rename from website/man_servervm.jsp rename to website/man_pages_old/man_servervm.jsp index bf5c439..f895a21 100644 --- a/website/man_servervm.jsp +++ b/website/man_pages_old/man_servervm.jsp @@ -7,7 +7,7 @@ <%@ taglib uri="http://displaytag.sf.net" prefix="dt" %> - + Documentation @@ -169,7 +169,7 @@ The VMware Player screen shot below displays JABAWS VM CPU settings.

- vmware cpu settings

@@ -229,12 +229,12 @@ New Service URL, and add JABAWS URL into the box provided. For more information please refer to Jalview help pages.

-

JABAWS welcome screenJABAWS welcome screen

If you click on Advanced Menu, you will see the configuration console, similar to the one below.

-

JABAWS welcome screenJABAWS welcome screen

If you need to configure a static IP address the configuration console will @@ -268,4 +268,4 @@ - \ No newline at end of file + \ No newline at end of file diff --git a/website/man_serverwar.jsp b/website/man_pages_old/man_serverwar.jsp similarity index 99% rename from website/man_serverwar.jsp rename to website/man_pages_old/man_serverwar.jsp index 54d943a..be77d97 100644 --- a/website/man_serverwar.jsp +++ b/website/man_pages_old/man_serverwar.jsp @@ -7,7 +7,7 @@ <%@ taglib uri="http://displaytag.sf.net" prefix="dt" %> - + Documentation @@ -492,4 +492,4 @@ Service ProbconsWS IS NOT FUNCTIONAL - \ No newline at end of file + \ No newline at end of file diff --git a/website/man_stats.jsp b/website/man_pages_old/man_stats.jsp similarity index 97% rename from website/man_stats.jsp rename to website/man_pages_old/man_stats.jsp index 2ecab15..d162d45 100644 --- a/website/man_stats.jsp +++ b/website/man_pages_old/man_stats.jsp @@ -7,7 +7,7 @@ <%@ taglib uri="http://displaytag.sf.net" prefix="dt" %> - + Documentation @@ -66,7 +66,7 @@ application server section for further details.

-

JABAWS usage statisticsJABAWS usage statistics

@@ -125,7 +125,7 @@ Detailed execution statistics for each month is available for authenticated users only.

-

JABAWS one month usage statisticsJABAWS one month usage statistics

Each table contains the number of jobs processed by JABAWS during the period of @@ -163,7 +163,7 @@ Configuring JABAWS execution statistics section for further details.

-

JABAWS - job list

+

JABAWS - job list

Columns:

  • JobID - the JABAWS job id, unique for every job
    • @@ -195,7 +195,7 @@

    - JABAWS- job details

    STARTED and FINISHED files contain Unix timestamp - when the job was started and @@ -327,4 +327,4 @@ local.stat.maxruntime=6

    - \ No newline at end of file + \ No newline at end of file diff --git a/website/static/img/folder-small.png b/website/static/img/folder-small.png new file mode 100644 index 0000000..1933f17 Binary files /dev/null and b/website/static/img/folder-small.png differ