From: Jim Procter Date: Thu, 23 Jun 2016 13:11:27 +0000 (+0100) Subject: JAL-2110 clarify javadoc X-Git-Tag: Release_2_10_0~140^2~5^2~40 X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=7c0a81832ad897941f0b06856765df8a04227ad8;p=jalview.git JAL-2110 clarify javadoc --- diff --git a/src/jalview/analysis/CrossRef.java b/src/jalview/analysis/CrossRef.java index 7dcaa17..2c5393d 100644 --- a/src/jalview/analysis/CrossRef.java +++ b/src/jalview/analysis/CrossRef.java @@ -125,6 +125,9 @@ public class CrossRef * * @param seq * the sequence whose dbrefs we are searching against + * @param fromDna + * when true, context is DNA - so sources identifying protein + * products will be returned. * @param sources * a list of sources to add matches to */ @@ -762,7 +765,16 @@ public class CrossRef * @param cf * a set of sequence mappings to add to * @param direct - * - search all references or only subset + * - indicates the type of relationship between returned sequences, + * xrf, and sequenceI that is required. + * * @return true if relationship found and sequence added. */ boolean searchDataset(boolean fromDna, SequenceI sequenceI,