From: Jim Procter <jprocter@compbio.dundee.ac.uk>
Date: Tue, 4 Jun 2013 09:45:19 +0000 (+0100)
Subject: JAL-1300 documentation
X-Git-Tag: Jalview_2_9~248^2~7
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=7d8da4f595b9d46dc1fcc2265aac8584391cb6ac;p=jalview.git

JAL-1300 documentation
---

diff --git a/help/html/features/annotationsFormat.html b/help/html/features/annotationsFormat.html
index 17c2c8b..665fb3f 100755
--- a/help/html/features/annotationsFormat.html
+++ b/help/html/features/annotationsFormat.html
@@ -178,6 +178,9 @@ property, then the idColour will also be used to colour the sequence.</li>
  <em>SEQUENCE_REF</em> sequence reference statement, the sequence representative
  for the group will be set to the referenced sequence.<!-- <br><strong>Note:</strong> if the <em>hide</em> 
  property is set then only the representative sequence for the group will be shown in the alignment.--></li>
+ <li>The interpretation of the COMBINE statement in <em>Version 2.8.1</em> was refined
+ so that only annotation line graphs with the given names ands the same 
+ <strong>SEQUENCE_REF</strong> and <strong>GROUP_REF</strong> scope are grouped.</li>
 </ul>
 <p> </p>
 <p>An example Annotation file is given below: