From: pvtroshin <pvtroshin@e3abac25-378b-4346-85de-24260fe3988d>
Date: Tue, 16 Aug 2011 13:22:10 +0000 (+0000)
Subject: Minor changes
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=7d95ae4c69a42a125d385912a49b31b38ac99e3b;p=jabaws.git

Minor changes

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4526 e3abac25-378b-4346-85de-24260fe3988d
---

diff --git a/TODO.txt b/TODO.txt
index 03ad987..4dc9f9b 100644
--- a/TODO.txt
+++ b/TODO.txt
@@ -1,4 +1,7 @@
-server war - obtaining command line binaries 
+reset execution statistic in VM!
+
++ regerate javadoc
++ server war - obtaining command line binaries 
 
 Write help on 
  + execution stats
diff --git a/conf/Executable.properties b/conf/Executable.properties
index ec1b885..dcb5d5a 100644
--- a/conf/Executable.properties
+++ b/conf/Executable.properties
@@ -75,16 +75,16 @@ clustalw.parameters.file=conf/settings/ClustalParameters.xml
 ######                 CLUSTAL OMEGA CONFIGURATION                ######
 local.clustalo.bin.windows=binaries/windows/clustalo/clustalo.exe
 local.clustalo.bin=binaries/src/clustalo/src/clustalo
-cluster.clustalo.bin=/homes/pvtroshin/workspace/jaba2/binaries/src/clustalo/src/clustalo
+#cluster.clustalo.bin=/homes/pvtroshin/workspace/jaba2/binaries/src/clustalo/src/clustalo
 ## This parameters specifies the directory where the matrices files are stored   
 #clustalo.presets.file=conf/settings/ClustaloPresets.xml
 clustalo.parameters.file=conf/settings/ClustaloParameters.xml
-clustalo.limits.file=conf/settings/ClustaloLimits.xml
+#clustalo.limits.file=conf/settings/ClustaloLimits.xml
 ## ClustalO can be executed on multiple CPUs if run on the cluster. 
 ## This parameter specifies the number of CPUs to use
-clustalo.cluster.cpunum=4
+#clustalo.cluster.cpunum=4
 ## This reserves a slot with CPUNUM on the cluster for the task
-clustalo.cluster.settings=-q 64bit-pri.q -pe smp 4 -l ram=1700M -l h_cpu=24:00:00  
+#clustalo.cluster.settings=-q 64bit-pri.q -pe smp 4 -l ram=1700M -l h_cpu=24:00:00  
 
 
 ######                 MUSCLE CONFIGURATION                 ######
diff --git a/website/download.html b/website/download.html
index 4cf7605..5feb188 100644
--- a/website/download.html
+++ b/website/download.html
@@ -107,7 +107,7 @@ page</title>
 
 </div>
 <!-- wrapper end-->
-<div id="copyright">Last update: 7 April 2011<br />
+<div id="copyright">Last update: 10 August 2011<br />
  Peter Troshin and Geoff Barton, The Barton Group, University of
 Dundee, UK</div>