From: jprocter Date: Wed, 14 Sep 2011 10:59:51 +0000 (+0100) Subject: test data for JAL-701 X-Git-Tag: Release_2_7~51 X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=7dd9c4874042f584dc1feb6a345fe929a8509e2b;p=jalview.git test data for JAL-701 --- diff --git a/examples/testdata/plantfdx.features b/examples/testdata/plantfdx.features new file mode 100644 index 0000000..ec06f67 --- /dev/null +++ b/examples/testdata/plantfdx.features @@ -0,0 +1,118 @@ +HELIX d4d189 +MOD_RES 47e459 +TRANSIT 6f949b +TURN 1d1e2d +METAL 70686e +SIGNAL 92c7dd +VARIANT 60beac +Pfam dc206a +CONFLICT c46c6e +STRAND 25c54c + +STARTGROUP uniprot +Iron-sulfur (2Fe-2S) < me < them > you FER_CAPAA -1 39 39 METAL +Iron-sulfur (2Fe-2S) < me < them > you FER_CAPAA -1 44 44 METAL +Iron-sulfur (2Fe-2S) <>,.?// FER_CAPAA -1 47 47 METAL +Iron-sulfur (2Fe-2S) FER_CAPAA -1 77 77 METAL +Description: Fer2 Status: True Positive Pfam 8_83 FER_CAPAA -1 8 83 Pfam +Chloroplast FER_CAPAN -1 1 47 TRANSIT +Iron-sulfur (2Fe-2S) FER_CAPAN -1 86 86 METAL +Iron-sulfur (2Fe-2S) FER_CAPAN -1 91 91 METAL +Iron-sulfur (2Fe-2S) FER_CAPAN -1 94 94 METAL +Iron-sulfur (2Fe-2S) FER_CAPAN -1 124 124 METAL +Phosphothreonine FER_CAPAN -1 136 136 MOD_RES +Description: Fer2 Status: True Positive Pfam 55_130 FER_CAPAN -1 55 130 Pfam +Chloroplast FER1_SOLLC -1 1 47 TRANSIT +Iron-sulfur (2Fe-2S) FER1_SOLLC -1 86 86 METAL +Iron-sulfur (2Fe-2S) FER1_SOLLC -1 91 91 METAL +Iron-sulfur (2Fe-2S) FER1_SOLLC -1 94 94 METAL +Iron-sulfur (2Fe-2S) FER1_SOLLC -1 124 124 METAL +Description: Fer2 Status: True Positive Pfam 55_130 FER1_SOLLC -1 55 130 Pfam +Evidence: EI4 Q93XJ9_SOLTU -1 1 48 SIGNAL +Description: Fer2 Status: True Positive Pfam 55_130 Q93XJ9_SOLTU -1 55 130 Pfam +Chloroplast FER1_PEA -1 1 52 TRANSIT +L -> I (in strain: cv. Onward) FER1_PEA -1 59 59 VARIANT +I -> L (in strain: cv. Onward) FER1_PEA -1 85 85 VARIANT +Iron-sulfur (2Fe-2S) FER1_PEA -1 91 91 METAL +Iron-sulfur (2Fe-2S) FER1_PEA -1 96 96 METAL +Iron-sulfur (2Fe-2S) FER1_PEA -1 99 99 METAL +Iron-sulfur (2Fe-2S) FER1_PEA -1 129 129 METAL +YPTS -> PPPA (in Ref. 2) FER1_PEA -1 132 135 CONFLICT +Description: Fer2 Status: True Positive Pfam 60_135 FER1_PEA -1 60 135 Pfam +Description: Fer2 Status: True Positive Pfam 63_138 Q7XA98_TRIPR -1 63 138 Pfam +Chloroplast FER1_MESCR -1 1 51 TRANSIT +Iron-sulfur (2Fe-2S) FER1_MESCR -1 90 90 METAL +Iron-sulfur (2Fe-2S) FER1_MESCR -1 95 95 METAL +Iron-sulfur (2Fe-2S) FER1_MESCR -1 98 98 METAL +Iron-sulfur (2Fe-2S) FER1_MESCR -1 128 128 METAL +Description: Fer2 Status: True Positive Pfam 59_134 FER1_MESCR -1 59 134 Pfam +Chloroplast FER1_SPIOL -1 1 50 TRANSIT +STRAND FER1_SPIOL -1 52 59 STRAND +TURN FER1_SPIOL -1 60 61 TURN +STRAND FER1_SPIOL -1 62 69 STRAND +TURN FER1_SPIOL -1 70 71 TURN +HELIX FER1_SPIOL -1 74 80 HELIX +TURN FER1_SPIOL -1 81 82 TURN +STRAND FER1_SPIOL -1 88 92 STRAND +Iron-sulfur (2Fe-2S) FER1_SPIOL -1 89 89 METAL +Iron-sulfur (2Fe-2S) FER1_SPIOL -1 94 94 METAL +TURN FER1_SPIOL -1 96 97 TURN +Iron-sulfur (2Fe-2S) FER1_SPIOL -1 97 97 METAL +STRAND FER1_SPIOL -1 98 104 STRAND +TURN FER1_SPIOL -1 109 110 TURN +HELIX FER1_SPIOL -1 116 121 HELIX +TURN FER1_SPIOL -1 122 122 TURN +STRAND FER1_SPIOL -1 123 125 STRAND +HELIX FER1_SPIOL -1 126 128 HELIX +Iron-sulfur (2Fe-2S) FER1_SPIOL -1 127 127 METAL +STRAND FER1_SPIOL -1 130 133 STRAND +STRAND FER1_SPIOL -1 135 138 STRAND +HELIX FER1_SPIOL -1 142 144 HELIX +Description: Fer2 Status: True Positive Pfam 58_133 FER1_SPIOL -1 58 133 Pfam +I -> V FER3_RAPSA -1 8 8 VARIANT +Iron-sulfur (2Fe-2S) FER3_RAPSA -1 39 39 METAL +Iron-sulfur (2Fe-2S) FER3_RAPSA -1 44 44 METAL +Iron-sulfur (2Fe-2S) FER3_RAPSA -1 47 47 METAL +S -> T FER3_RAPSA -1 55 55 VARIANT +Iron-sulfur (2Fe-2S) FER3_RAPSA -1 77 77 METAL +R -> K FER3_RAPSA -1 91 91 VARIANT +M -> V FER3_RAPSA -1 95 95 VARIANT +Description: Fer2 Status: True Positive Pfam 8_83 FER3_RAPSA -1 8 83 Pfam +Chloroplast FER1_ARATH -1 1 52 TRANSIT +Iron-sulfur (2Fe-2S) FER1_ARATH -1 91 91 METAL +Iron-sulfur (2Fe-2S) FER1_ARATH -1 96 96 METAL +Iron-sulfur (2Fe-2S) FER1_ARATH -1 99 99 METAL +Iron-sulfur (2Fe-2S) FER1_ARATH -1 129 129 METAL +Description: Fer2 Status: True Positive Pfam 60_135 FER1_ARATH -1 60 135 Pfam +Iron-sulfur (2Fe-2S) FER_BRANA -1 39 39 METAL +Iron-sulfur (2Fe-2S) FER_BRANA -1 44 44 METAL +Iron-sulfur (2Fe-2S) FER_BRANA -1 47 47 METAL +Iron-sulfur (2Fe-2S) FER_BRANA -1 77 77 METAL +Description: Fer2 Status: True Positive Pfam 8_83 FER_BRANA -1 8 83 Pfam +Chloroplast FER2_ARATH -1 1 52 TRANSIT +Iron-sulfur (2Fe-2S) FER2_ARATH -1 91 91 METAL +Iron-sulfur (2Fe-2S) FER2_ARATH -1 96 96 METAL +Iron-sulfur (2Fe-2S) FER2_ARATH -1 99 99 METAL +Iron-sulfur (2Fe-2S) FER2_ARATH -1 129 129 METAL +Description: Fer2 Status: True Positive Pfam 60_135 FER2_ARATH -1 60 135 Pfam +Description: Fer2 Status: True Positive Pfam 60_118 Q93Z60_ARATH -1 60 118 Pfam +Chloroplast FER1_MAIZE -1 1 52 TRANSIT +STRAND FER1_MAIZE -1 57 59 STRAND +STRAND FER1_MAIZE -1 72 74 STRAND +HELIX FER1_MAIZE -1 76 80 HELIX +TURN FER1_MAIZE -1 81 84 TURN +STRAND FER1_MAIZE -1 90 97 STRAND +Iron-sulfur (2Fe-2S) FER1_MAIZE -1 91 91 METAL +Iron-sulfur (2Fe-2S) FER1_MAIZE -1 96 96 METAL +TURN FER1_MAIZE -1 98 99 TURN +Iron-sulfur (2Fe-2S) FER1_MAIZE -1 99 99 METAL +TURN FER1_MAIZE -1 118 119 TURN +HELIX FER1_MAIZE -1 120 123 HELIX +TURN FER1_MAIZE -1 128 129 TURN +Iron-sulfur (2Fe-2S) FER1_MAIZE -1 129 129 METAL +STRAND FER1_MAIZE -1 132 135 STRAND +STRAND FER1_MAIZE -1 137 141 STRAND +TURN FER1_MAIZE -1 142 142 TURN +Description: Fer2 Status: True Positive Pfam 60_135 FER1_MAIZE -1 60 135 Pfam +Description: Fer2 Status: True Positive Pfam 52_127 O80429_MAIZE -1 52 127 Pfam +ENDGROUP uniprot