From: Jim Procter <jprocter@issues.jalview.org>
Date: Mon, 9 Nov 2015 07:00:13 +0000 (+0000)
Subject: JAL-1950 javadoc: clarify AlignmentAnnotation.createSequenceMapping
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=7df57467b59ea515fd8b31c28cb50280fb2aeddb;p=jalview.git

JAL-1950 javadoc: clarify AlignmentAnnotation.createSequenceMapping
---

diff --git a/src/jalview/datamodel/AlignmentAnnotation.java b/src/jalview/datamodel/AlignmentAnnotation.java
index 9bd1f2e..af135a9 100755
--- a/src/jalview/datamodel/AlignmentAnnotation.java
+++ b/src/jalview/datamodel/AlignmentAnnotation.java
@@ -245,6 +245,7 @@ public class AlignmentAnnotation
    * 
    * @see java.lang.Object#finalize()
    */
+  @Override
   protected void finalize() throws Throwable
   {
     sequenceRef = null;
@@ -920,6 +921,7 @@ public class AlignmentAnnotation
    * @param seqRef
    * @param startRes
    * @param alreadyMapped
+   *          - annotation are at aligned columns
    */
   public void createSequenceMapping(SequenceI seqRef, int startRes,
           boolean alreadyMapped)