From: Jim Procter <jprocter@issues.jalview.org>
Date: Mon, 1 Aug 2016 20:13:22 +0000 (+0100)
Subject: JAL-2164 JAL-1919 JAL-1270 use structure import settings to properly configure for... 
X-Git-Tag: Release_2_10_0~123
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=7e5eb5ba567e0bb3ee6b44fe6e49b60814cd5cdd;p=jalview.git

JAL-2164 JAL-1919 JAL-1270 use structure import settings to properly configure for test
---

diff --git a/test/jalview/io/Jalview2xmlTests.java b/test/jalview/io/Jalview2xmlTests.java
index ddc615f..31e1a35 100644
--- a/test/jalview/io/Jalview2xmlTests.java
+++ b/test/jalview/io/Jalview2xmlTests.java
@@ -275,10 +275,8 @@ public class Jalview2xmlTests
   @Test(groups = { "Functional" })
   public void viewRefPdbAnnotation() throws Exception
   {
-    Cache.applicationProperties.setProperty("STRUCT_FROM_PDB",
-            Boolean.TRUE.toString());
-    Cache.applicationProperties.setProperty("ADD_SS_ANN",
-            Boolean.TRUE.toString());
+    StructureImportSettings.setProcessSecondaryStructure(true);
+    StructureImportSettings.setVisibleChainAnnotation(true);
     AlignFrame af = new jalview.io.FileLoader().LoadFileWaitTillLoaded(
             "examples/exampleFile_2_7.jar", FormatAdapter.FILE);
     assertTrue("Didn't read in the example file correctly.", af != null);