From: Jim Procter <jprocter@issues.jalview.org>
Date: Mon, 19 Sep 2016 17:16:26 +0000 (+0100)
Subject: JAL-2189 Release notes for JAL-2079 JAL-2084 JAL-2054 JAL-2099
X-Git-Tag: Release_2_10_0~39^2~25
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=7eac1cc88e65db74c245a80e28fec063919e8fe4;p=jalview.git

JAL-2189 Release notes for JAL-2079 JAL-2084 JAL-2054 JAL-2099
---

diff --git a/help/html/releases.html b/help/html/releases.html
index 0837cb0..cd8dae0 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -63,6 +63,8 @@
             <li><!-- JAL---></li>
             <li><!-- JAL---></li>
             <li><!-- JAL---></li>
+            <li><!-- JAL-2079 -->Updated download sites used for Rfam and Pfam sources to xfam.org</li>
+            <li><!-- JAL-2084 -->Disabled Rfam(Full) in the sequence fetcher</li>
             <li><!-- JAL-2123 -->Show residue labels in Chimera when mousing over sequences in Jalview</li>
             <li><!-- JAL-2027-->Support for reverse-complement coding regions in ENA and EMBL</li>
             <li><!-- JAL-1855, JAL-2113, JAL-2114-->Upgrade to EMBL XML 1.2 for ENA record retrieval</li>
@@ -85,13 +87,14 @@
             <li><!-- JAL-2077 -->reinstate CTRL-click for opening pop-up menu on OSX</li>
             <li><!-- JAL-2018-->Export features in Jalview format (again) includes graduated colourschemes</li>
             <li><!-- JAL-1722, JAL-2001-->More responsive when working with big alignments and lots of hidden columns</li>
-            <li><!-- JAL-2053-->hidden column markers not always rendered at right of alignment window</li>
+            <li><!-- JAL-2053-->Hidden column markers not always rendered at right of alignment window</li>
             <li><!-- JAL-2067, JAL-  -->Tidied up links in help file table of contents</li>
             <li><!-- JAL-2072  -->Feature based tree calculation not shown for DNA alignments</li>
             <li><!-- JAL-2075  -->Hidden columns ignored during feature based tree calculation</li>
             <li><!-- JAL-2065  -->Alignment view stops updating when show unconserved enabled for group on alignment</li>
             <li><!--  JAL-2086  -->Cannot insert gaps into sequence when set as reference</li>
             <li><!-- JAL-2146 -->Alignment column in status incorrectly shown as &quot;Sequence position&quot; when mousing over annotation</li>
+            <li><!--  JAL-2099 -->Incorrect column numbers in ruler when hidden columns present</li>
             
           </ul>
           <em>Application</em>